从海洋海绵 Halichondria panicea 中分离出的 Maribacter halichondriae sp.

Leon X Steiner, Jutta Wiese, Tanja Rahn, Erik Borchert, Beate M Slaby, Ute Hentschel
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引用次数: 0

摘要

从海洋面包屑海绵 Halichondria panicea 中分离出了黄杆菌科的一个新成员(称为 Hal144T)。海绵材料于 2018 年在位于基尔峡湾(德国波罗的海)的 Schilksee 采集。对全长 Hal144T 16S rRNA 基因序列进行的系统发生学分析表明,其与 Maribacter 属最近的模式菌株的相似度为 94.3% 至 96.6%。16S rRNA基因序列的系统发生树显示,Hal144T菌株与其近亲Maribacter aestuarii GY20T (96.6%)和Maribacter thermophilus HT7-2T (96.3%)组成一个群集。基因组系统进化显示,卤水荚膜马氏菌 Hal144T 从由阿诺索氏马氏菌、卢特氏马氏菌和多孔马氏菌组成的菌群中分离出来。Hal144T 株卤软化马氏菌的基因组比较结果显示,其平均核苷酸相同度在 75-76% 之间,数字 DNA-DNA 杂交值在 13.1-13.4% 之间。与下一相关类型菌株相比,菌株 Hal144T 显示出独特的基因组特征,如磷酸烯醇丙酮酸依赖性磷酸转移酶系统途径、丝氨酸-乙醛酸循环、脂质 A 3-O-脱乙酰酶、3-木酮糖-6-磷酸合成酶、假基因的富集以及参与细胞壁和包膜生物发生的基因,表明其对宿主的适应性。经测定,菌株 Hal144T 为革兰氏阴性、嗜中性、严格需氧、柔红蛋白阳性,对氨基糖苷类抗生素有抗药性,并能利用 N-乙酰基-β-D-葡萄糖胺。最佳生长温度为 25-30℃,盐度范围为 2-6%,pH 值范围为 5-8。菌株 Hal144T 的 DNA G + C 含量为 41.4 摩尔%。基于多相法,菌株 Hal144T 代表了海洋杆菌属的一个新物种,我们将其命名为海洋杆菌 Halichondriae sp.模式菌株为 Hal144T(= DSM 114563T = LMG 32744T)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Maribacter halichondriae sp. nov., isolated from the marine sponge Halichondria panicea, displays features of a sponge-associated life style.

A new member of the family Flavobacteriaceae (termed Hal144T) was isolated from the marine breadcrumb sponge Halichondria panicea. Sponge material was collected in 2018 at Schilksee which is located in the Kiel Fjord (Baltic Sea, Germany). Phylogenetic analysis of the full-length Hal144T 16S rRNA gene sequence revealed similarities from 94.3 to 96.6% to the nearest type strains of the genus Maribacter. The phylogenetic tree of the 16S rRNA gene sequences depicted a cluster of strain Hal144T with its closest relatives Maribacter aestuarii GY20T (96.6%) and Maribacter thermophilus HT7-2T (96.3%). Genome phylogeny showed that Maribacter halichondriae Hal144T branched from a cluster consisting of Maribacter arenosus, Maribacter luteus, and Maribacter polysiphoniae. Genome comparisons of strain Maribacter halichondriae Hal144T with Maribacter sp. type strains exhibited average nucleotide identities in the range of 75-76% and digital DNA-DNA hybridisation values in the range of 13.1-13.4%. Compared to the next related type strains, strain Hal144T revealed unique genomic features such as phosphoenolpyruvate-dependent phosphotransferase system pathway, serine-glyoxylate cycle, lipid A 3-O-deacylase, 3-hexulose-6-phosphate synthase, enrichment of pseudogenes and of genes involved in cell wall and envelope biogenesis, indicating an adaptation to the host. Strain Hal144T was determined to be Gram-negative, mesophilic, strictly aerobic, flexirubin positive, resistant to aminoglycoside antibiotics, and able to utilize N-acetyl-β-D-glucosamine. Optimal growth occurred at 25-30 °C, within a salinity range of 2-6% sea salt, and a pH range between 5 and 8. The major fatty acids identified were C17:0 3-OH, iso-C15:0, and iso-C15:1 G. The DNA G + C content of strain Hal144T was 41.4 mol%. Based on the polyphasic approach, strain Hal144T represents a novel species of the genus Maribacter, and we propose the name Maribacter halichondriae sp. nov. The type strain is Hal144T (= DSM 114563T = LMG 32744T).

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来源期刊
CiteScore
5.60
自引率
11.50%
发文量
104
审稿时长
3 months
期刊介绍: Antonie van Leeuwenhoek publishes papers on fundamental and applied aspects of microbiology. Topics of particular interest include: taxonomy, structure & development; biochemistry & molecular biology; physiology & metabolic studies; genetics; ecological studies; especially molecular ecology; marine microbiology; medical microbiology; molecular biological aspects of microbial pathogenesis and bioinformatics.
期刊最新文献
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