非单调剂量反应的必要条件,并应用于动力学校对模型 -- 扩展版

Polly Y. Yu, Eduardo D. Sontag
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引用次数: 0

摘要

在实验生物学中经常可以观察到稳态非单调("双相")剂量反应,这就提出了一个控制理论问题,即确定哪些可能的机制可能是这种行为的基础。众所周知,网络中不连贯前馈回路(IFFL)的存在可能导致非单调反应。有人猜想,这一条件也是必要的,即非单调响应意味着 IFFL 的存在。在本文中,我们证明了这一猜想是错误的,并在此过程中证明了一个较弱的版本:要么必须存在一个 IFFL,要么必须同时存在一个正反馈回路和一个负反馈回路。为此,我们给出了符号矩阵的最小值具有混合符号时的必要条件和充分条件。最后,我们全面研究了免疫细胞活化模型何时会表现出稳态非单调剂量反应。
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A necessary condition for non-monotonic dose response, with an application to a kinetic proofreading model -- Extended version
Steady state non-monotonic ("biphasic") dose responses are often observed in experimental biology, which raises the control-theoretic question of identifying which possible mechanisms might underlie such behaviors. It is well known that the presence of an incoherent feedforward loop (IFFL) in a network may give rise to a non-monotonic response. It has been conjectured that this condition is also necessary, i.e. that a non-monotonic response implies the existence of an IFFL. In this paper, we show that this conjecture is false, and in the process prove a weaker version: that either an IFFL must exist or both a positive loop and a negative feedback loop must exist. Towards this aim, we give necessary and sufficient conditions for when minors of a symbolic matrix have mixed signs. Finally, we study in full generality when a model of immune T-cell activation could exhibit a steady state non-monotonic dose response.
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