Lingang Dai , Xiang Chen , Dongwei An , Meimei Xiao , Jiajing Huang , Jiali Xu , Yong Ruan
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The association analysis showed that g.–246 C > T, g.72323 T > C, and g.178634 A > G loci were significantly associated with growth traits (<em>P</em> < 0.05). Linkage disequilibrium analysis of each locus showed that g.72323 T > C and g.72814 T > A loci had the strongest linkage (<em>r</em><sup>2</sup> = 0.482, <em>D'</em> = 0.73). Furthermore, according to an analysis conducted using TFDB4 software, it was predicted that a mutation in the promoter region of the g.–246 C > T locus resulted in the absence of four transcriptional regulatory factors. The results of dual-luciferase reporter assay further demonstrated that mutation of the g.–246 C > T locus reduced the transcriptional activity of the promoter region of the <em>Grb10</em> gene. These findings suggest that <em>Grb10</em> gene polymorphism could affect growth traits in goats.</p></div>","PeriodicalId":21758,"journal":{"name":"Small Ruminant Research","volume":"234 ","pages":"Article 107267"},"PeriodicalIF":1.6000,"publicationDate":"2024-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The novel candidate gene Grb10 regulates the growth performance of Guizhou white goats\",\"authors\":\"Lingang Dai , Xiang Chen , Dongwei An , Meimei Xiao , Jiajing Huang , Jiali Xu , Yong Ruan\",\"doi\":\"10.1016/j.smallrumres.2024.107267\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Growth factor receptor binding protein 10 (<em>Grb10</em>) regulates muscle growth but its function in goats is not well studied. This study examined the relationship between <em>Grb10</em> gene polymorphism and growth traits in Guizhou white goats. Further, the effect of promoter polymorphism on <em>Grb10</em> transcription was analyzed via a dual-luciferase assay. Quantitative reverse transcription-polymerase chain reaction analysis showed that the expression level of the <em>Grb10</em> gene was the highest in the longissimus dorsi muscle (<em>P</em> < 0.01) and the lowest in the spleen. Moreover, sequencing results showed that the <em>Grb10</em> gene had five single nucleotide polymorphisms. The association analysis showed that g.–246 C > T, g.72323 T > C, and g.178634 A > G loci were significantly associated with growth traits (<em>P</em> < 0.05). Linkage disequilibrium analysis of each locus showed that g.72323 T > C and g.72814 T > A loci had the strongest linkage (<em>r</em><sup>2</sup> = 0.482, <em>D'</em> = 0.73). Furthermore, according to an analysis conducted using TFDB4 software, it was predicted that a mutation in the promoter region of the g.–246 C > T locus resulted in the absence of four transcriptional regulatory factors. The results of dual-luciferase reporter assay further demonstrated that mutation of the g.–246 C > T locus reduced the transcriptional activity of the promoter region of the <em>Grb10</em> gene. 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引用次数: 0
摘要
生长因子受体结合蛋白 10(Grb10)可调节肌肉生长,但其在山羊中的功能尚未得到充分研究。本研究考察了 Grb10 基因多态性与贵州白山羊生长性状之间的关系。此外,还通过双荧光素酶试验分析了启动子多态性对 Grb10 转录的影响。定量反转录聚合酶链反应分析表明,Grb10基因的表达水平在背阔肌中最高(P< 0.01),在脾脏中最低。此外,测序结果显示,Grb10 基因存在 5 个单核苷酸多态性。关联分析表明,g.-246 C >T、g.72323 T >C和g.178634 A >G位点与生长性状显著相关(P <0.05)。对各基因座的连锁不平衡分析表明,g.72323 T > C 和 g.72814 T > A 基因座的连锁性最强(r2 = 0.482,D' = 0.73)。此外,根据使用 TFDB4 软件进行的分析预测,g.-246 C > T 基因座启动子区域的突变导致四个转录调控因子的缺失。双荧光素酶报告实验的结果进一步证明,g.-246 C > T基因座的突变降低了Grb10基因启动子区的转录活性。这些研究结果表明,Grb10基因的多态性可能会影响山羊的生长性状。
The novel candidate gene Grb10 regulates the growth performance of Guizhou white goats
Growth factor receptor binding protein 10 (Grb10) regulates muscle growth but its function in goats is not well studied. This study examined the relationship between Grb10 gene polymorphism and growth traits in Guizhou white goats. Further, the effect of promoter polymorphism on Grb10 transcription was analyzed via a dual-luciferase assay. Quantitative reverse transcription-polymerase chain reaction analysis showed that the expression level of the Grb10 gene was the highest in the longissimus dorsi muscle (P < 0.01) and the lowest in the spleen. Moreover, sequencing results showed that the Grb10 gene had five single nucleotide polymorphisms. The association analysis showed that g.–246 C > T, g.72323 T > C, and g.178634 A > G loci were significantly associated with growth traits (P < 0.05). Linkage disequilibrium analysis of each locus showed that g.72323 T > C and g.72814 T > A loci had the strongest linkage (r2 = 0.482, D' = 0.73). Furthermore, according to an analysis conducted using TFDB4 software, it was predicted that a mutation in the promoter region of the g.–246 C > T locus resulted in the absence of four transcriptional regulatory factors. The results of dual-luciferase reporter assay further demonstrated that mutation of the g.–246 C > T locus reduced the transcriptional activity of the promoter region of the Grb10 gene. These findings suggest that Grb10 gene polymorphism could affect growth traits in goats.
期刊介绍:
Small Ruminant Research publishes original, basic and applied research articles, technical notes, and review articles on research relating to goats, sheep, deer, the New World camelids llama, alpaca, vicuna and guanaco, and the Old World camels.
Topics covered include nutrition, physiology, anatomy, genetics, microbiology, ethology, product technology, socio-economics, management, sustainability and environment, veterinary medicine and husbandry engineering.