使用 MobileNetV3 模型评估乳腺组织病理学图像分类的精确度和准确性

Kenneth DeVoe , Gary Takahashi , Ebrahim Tarshizi , Allan Sacker
{"title":"使用 MobileNetV3 模型评估乳腺组织病理学图像分类的精确度和准确性","authors":"Kenneth DeVoe ,&nbsp;Gary Takahashi ,&nbsp;Ebrahim Tarshizi ,&nbsp;Allan Sacker","doi":"10.1016/j.jpi.2024.100377","DOIUrl":null,"url":null,"abstract":"<div><p>Accurate surgical pathological assessment of breast biopsies is essential to the proper management of breast lesions. Identifying histological features, such as nuclear pleomorphism, increased mitotic activity, cellular atypia, patterns of architectural disruption, as well as invasion through basement membranes into surrounding stroma and normal structures, including invasion of vascular and lymphatic spaces, help to classify lesions as malignant. This visual assessment is repeated on numerous slides taken at various sections through the resected tumor, each at different magnifications. Computer vision models have been proposed to assist human pathologists in classification tasks such as these. Using MobileNetV3, a convolutional architecture designed to achieve high accuracy with a compact parameter footprint, we attempted to classify breast cancer images in the BreakHis_v1 breast pathology dataset to determine the performance of this model out-of-the-box. Using transfer learning to take advantage of ImageNet embeddings without special feature extraction, we were able to correctly classify histopathology images broadly as benign or malignant with 0.98 precision, 0.97 recall, and an F1 score of 0.98. The ability to classify into histological subcategories was varied, with the greatest success being with classifying ductal carcinoma (accuracy 0.95), and the lowest success being with lobular carcinoma (accuracy 0.59). Multiclass ROC assessment of performance as a multiclass classifier yielded AUC values ≥0.97 in both benign and malignant subsets. In comparison with previous efforts, using older and larger convolutional network architectures with feature extraction pre-processing, our work highlights that modern, resource-efficient architectures can classify histopathological images with accuracy that at least matches that of previous efforts, without the need for labor-intensive feature extraction protocols. Suggestions to further refine the model are discussed.</p></div>","PeriodicalId":37769,"journal":{"name":"Journal of Pathology Informatics","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2024-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2153353924000166/pdfft?md5=3267cff7f293c28129100035b0de0ddd&pid=1-s2.0-S2153353924000166-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Evaluation of the precision and accuracy in the classification of breast histopathology images using the MobileNetV3 model\",\"authors\":\"Kenneth DeVoe ,&nbsp;Gary Takahashi ,&nbsp;Ebrahim Tarshizi ,&nbsp;Allan Sacker\",\"doi\":\"10.1016/j.jpi.2024.100377\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Accurate surgical pathological assessment of breast biopsies is essential to the proper management of breast lesions. Identifying histological features, such as nuclear pleomorphism, increased mitotic activity, cellular atypia, patterns of architectural disruption, as well as invasion through basement membranes into surrounding stroma and normal structures, including invasion of vascular and lymphatic spaces, help to classify lesions as malignant. This visual assessment is repeated on numerous slides taken at various sections through the resected tumor, each at different magnifications. Computer vision models have been proposed to assist human pathologists in classification tasks such as these. Using MobileNetV3, a convolutional architecture designed to achieve high accuracy with a compact parameter footprint, we attempted to classify breast cancer images in the BreakHis_v1 breast pathology dataset to determine the performance of this model out-of-the-box. Using transfer learning to take advantage of ImageNet embeddings without special feature extraction, we were able to correctly classify histopathology images broadly as benign or malignant with 0.98 precision, 0.97 recall, and an F1 score of 0.98. The ability to classify into histological subcategories was varied, with the greatest success being with classifying ductal carcinoma (accuracy 0.95), and the lowest success being with lobular carcinoma (accuracy 0.59). Multiclass ROC assessment of performance as a multiclass classifier yielded AUC values ≥0.97 in both benign and malignant subsets. In comparison with previous efforts, using older and larger convolutional network architectures with feature extraction pre-processing, our work highlights that modern, resource-efficient architectures can classify histopathological images with accuracy that at least matches that of previous efforts, without the need for labor-intensive feature extraction protocols. Suggestions to further refine the model are discussed.</p></div>\",\"PeriodicalId\":37769,\"journal\":{\"name\":\"Journal of Pathology Informatics\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-04-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2153353924000166/pdfft?md5=3267cff7f293c28129100035b0de0ddd&pid=1-s2.0-S2153353924000166-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Pathology Informatics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2153353924000166\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"Medicine\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Pathology Informatics","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2153353924000166","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"Medicine","Score":null,"Total":0}
引用次数: 0

摘要

对乳腺活检组织进行准确的手术病理评估对正确处理乳腺病变至关重要。确定组织学特征,如核多形性、有丝分裂活动增加、细胞不典型性、结构破坏模式,以及基底膜对周围基质和正常结构的侵袭,包括对血管和淋巴间隙的侵袭,有助于将病变分为恶性。这种视觉评估需要在切除肿瘤的不同切面上以不同的放大倍率拍摄的大量切片上重复进行。计算机视觉模型已被提出来协助人类病理学家完成类似的分类任务。MobileNetV3 是一种卷积架构,旨在以紧凑的参数足迹实现高准确度,我们尝试使用 MobileNetV3 对 BreakHis_v1 乳腺病理数据集中的乳腺癌图像进行分类,以确定该模型的开箱即用性能。我们使用迁移学习来利用 ImageNet 嵌入的优势,无需特殊的特征提取,就能正确地将组织病理学图像大致分为良性和恶性,精确度为 0.98,召回率为 0.97,F1 得分为 0.98。组织病理学亚类的分类能力各不相同,其中导管癌的分类成功率最高(准确率为 0.95),小叶癌的分类成功率最低(准确率为 0.59)。作为多类分类器的多类 ROC 性能评估结果显示,良性和恶性子集的 AUC 值均≥0.97。与以前使用较老和较大的卷积网络架构并进行特征提取预处理的工作相比,我们的工作突出表明,现代的、资源节约型架构可以对组织病理学图像进行分类,其准确性至少可以与以前的工作相媲美,而且不需要耗费大量人力的特征提取协议。我们还讨论了进一步完善模型的建议。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Evaluation of the precision and accuracy in the classification of breast histopathology images using the MobileNetV3 model

Accurate surgical pathological assessment of breast biopsies is essential to the proper management of breast lesions. Identifying histological features, such as nuclear pleomorphism, increased mitotic activity, cellular atypia, patterns of architectural disruption, as well as invasion through basement membranes into surrounding stroma and normal structures, including invasion of vascular and lymphatic spaces, help to classify lesions as malignant. This visual assessment is repeated on numerous slides taken at various sections through the resected tumor, each at different magnifications. Computer vision models have been proposed to assist human pathologists in classification tasks such as these. Using MobileNetV3, a convolutional architecture designed to achieve high accuracy with a compact parameter footprint, we attempted to classify breast cancer images in the BreakHis_v1 breast pathology dataset to determine the performance of this model out-of-the-box. Using transfer learning to take advantage of ImageNet embeddings without special feature extraction, we were able to correctly classify histopathology images broadly as benign or malignant with 0.98 precision, 0.97 recall, and an F1 score of 0.98. The ability to classify into histological subcategories was varied, with the greatest success being with classifying ductal carcinoma (accuracy 0.95), and the lowest success being with lobular carcinoma (accuracy 0.59). Multiclass ROC assessment of performance as a multiclass classifier yielded AUC values ≥0.97 in both benign and malignant subsets. In comparison with previous efforts, using older and larger convolutional network architectures with feature extraction pre-processing, our work highlights that modern, resource-efficient architectures can classify histopathological images with accuracy that at least matches that of previous efforts, without the need for labor-intensive feature extraction protocols. Suggestions to further refine the model are discussed.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Pathology Informatics
Journal of Pathology Informatics Medicine-Pathology and Forensic Medicine
CiteScore
3.70
自引率
0.00%
发文量
2
审稿时长
18 weeks
期刊介绍: The Journal of Pathology Informatics (JPI) is an open access peer-reviewed journal dedicated to the advancement of pathology informatics. This is the official journal of the Association for Pathology Informatics (API). The journal aims to publish broadly about pathology informatics and freely disseminate all articles worldwide. This journal is of interest to pathologists, informaticians, academics, researchers, health IT specialists, information officers, IT staff, vendors, and anyone with an interest in informatics. We encourage submissions from anyone with an interest in the field of pathology informatics. We publish all types of papers related to pathology informatics including original research articles, technical notes, reviews, viewpoints, commentaries, editorials, symposia, meeting abstracts, book reviews, and correspondence to the editors. All submissions are subject to rigorous peer review by the well-regarded editorial board and by expert referees in appropriate specialties.
期刊最新文献
Digital mapping of resected cancer specimens: The visual pathology report A precise machine learning model: Detecting cervical cancer using feature selection and explainable AI ViCE: An automated and quantitative program to assess intestinal tissue morphology Deep feature batch correction using ComBat for machine learning applications in computational pathology LVI-PathNet: Segmentation-classification pipeline for detection of lymphovascular invasion in whole slide images of lung adenocarcinoma
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1