比眼睛看到的更多:从基因组学角度看 Seleniivibrio woodruffii 菌株 S4T 的钼多酶多样性。

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS ACS Applied Bio Materials Pub Date : 2024-04-04 DOI:10.1093/lambio/ovae038
Tiffany S. Louie, Anil Kumar, Elisabetta Bini, Max M Häggblom
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引用次数: 0

摘要

Seleniivibrio woodruffii 菌株 S4T 是一种强制性厌氧菌,属于变形菌门。它因具有呼吸硒酸盐的能力而被分离出来,同时还被发现具有呼吸砷酸盐的能力。该细菌的高质量基因组草案为 2.9 Mbp,G+C 含量为 48%,有 2,762 个预测基因,其中 2,709 个是编码蛋白质的基因,53 个是 RNA 基因。基因组分析的重点是编码含钼酶(molybdoenzymes)的基因,发现了大量编码二甲基亚砜还原酶家族蛋白(DMSOR)的基因,包括用于硒酸盐和砷酸盐呼吸的假定还原酶,以及固氮作用的基因。呼吸钼多酶催化氧化还原反应,将电子转移到各种底物上,这些底物可作为产生能量的终端电子受体。S. woodruffii 菌株 S4T 还具有钼酸盐转运体和 DMSORs 活性中心特有的钼蝶呤鸟嘌呤二核苷酸辅助因子生物合成的重要基因。系统发育分析显示,候选的呼吸 DMSORs 在基因组中横跨 9 个亚科。我们的分析揭示了这种有趣微生物尚未开发的潜力,并扩展了我们对钼多酶共存的认识。
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Mo than Meets the Eye: Genomic Insights into Molybdoenzyme Diversity of Seleniivibrio woodruffii strain S4T.
Seleniivibrio woodruffii strain S4T is an obligate anaerobe belonging to the phylum Deferribacterota. It was isolated for its ability to respire selenate and was also found to respire arsenate. The high-quality draft genome of this bacterium is 2.9 Mbp, has a G+C content of 48%, 2,762 predicted genes of which 2,709 are protein-coding and 53 RNA genes. An analysis of the genome focusing on the genes encoding for molybdenum-containing enzymes (molybdoenzymes) uncovered a remarkable number of genes encoding for members of the dimethylsulfoxide reductase family of proteins (DMSOR), including putative reductases for selenate and arsenate respiration, as well as genes for nitrogen-fixation. Respiratory molybdoenzymes catalyze redox reactions that transfer electrons to a variety of substrates that can act as terminal electron acceptors for energy generation. S. woodruffii strain S4T also has essential genes for molybdate transporters and the biosynthesis of the molybdopterin guanine dinucleotide cofactors characteristic of the active centers of DMSORs. Phylogenetic analysis revealed candidate respiratory DMSORs spanning 9 subfamilies encoded within the genome. Our analysis revealed the untapped potential of this interesting microorganism and expands our knowledge of molybdoenzyme co-occurrence.
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来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
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