聚焦--知名研究人员

IF 1.8 3区 生物学 Q3 DEVELOPMENTAL BIOLOGY Journal of experimental zoology. Part B, Molecular and developmental evolution Pub Date : 2024-04-30 DOI:10.1002/jez.b.23254
Ingo Braasch
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This fascination kept going and was a reason I chose the University of Konstanz for undergraduate studies because of its strong curricular focus on molecular biology. Working as an undergraduate researcher in the Meyer Lab and being surrounded by an international crew of world-class molecular evolutionary biologists around me – who even used fish models to answer big questions about the deep evolutionary history of vertebrates – was immensely thrilling. Comparing sequences from diverse organisms and reconstructing their evolutionary change across phylogenies, I could practically look back in time! I knew I had found my path. However, sequencing DNA and analyzing genetic information on the computer was not enough for me. Fondly remembering my childhood fish breeding projects and the beauty of watching fish embryos grow, I successively added developmental biology to my research portfolio. 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引用次数: 0

摘要

Ingo是本期 "生物医学进化论的水生模型 "特刊的客座联合编辑。网站:https://www.fishevodevogeno.org/Google 学术网页:https://scholar.google.com/citations?user=xVw8dCAAAAAJI 在德国康斯坦茨大学攻读生物学,本科时曾在阿克塞尔-迈耶(Axel Meyer)的小组与当时两位出色的博士后一起从事我的第一个比较鱼类基因组学项目:约翰-泰勒(John S. Taylor,现任加拿大维多利亚大学教师)和沃尔特-萨尔茨伯格(Walter Salzburger,现任瑞士巴塞尔大学教师)。博士期间,我加入了德国维尔茨堡大学的曼弗雷德-沙特尔(Manfred Schartl)和让-尼古拉斯-沃尔夫(Jean-Nicolas Volff)的团队,研究全基因组复制对脊椎动物色素进化的功能性遗传影响。博士后期间,我在尤金俄勒冈大学约翰-H-波斯特斯韦特(John H. Postlethwait)小组工作。当时约翰的研究小组刚刚开始将斑鲤作为长尾鱼类和长尾鱼类基因组复制的基因组外群。在那里,我开始将斑点叉尾鮰作为脊椎动物生物学和进化论的发育和功能基因组模型系统进行开发,我在密歇根州立大学的实验室继续这项工作。我在德国外省长大,父亲是中学化学和物理教师,母亲是制药技师,因此我很早就接触到自然科学。从小学开始,我就热衷于阅读有关恐龙和史前人类的书籍,这比《侏罗纪公园》让古生物学变酷还要早几年。因此,虽然当时我还不知道这个词,但我很早就对宏观进化有了认识。高中时,我饲养了各种各样的鱼类(鱼缸再多也不为过),同时阅读了达尔文的《小猎犬号航行记》、进化论和遗传学方面的书籍。这种痴迷一直持续到现在,这也是我选择康斯坦茨大学攻读本科的原因之一,因为该校的分子生物学课程重点突出。在迈耶实验室担任本科生研究员,身边围绕着一群世界一流的分子进化生物学家--他们甚至用鱼类模型来解答脊椎动物深层进化史的重大问题--让我感到无比兴奋。比较来自不同生物的序列,重建它们在不同系统发育过程中的进化变化,我几乎可以回望过去!我知道自己找到了方向。然而,DNA测序和在电脑上分析遗传信息对我来说还远远不够。回想起儿时的养鱼计划和观察鱼胚胎成长的美好时光,我陆续将发育生物学加入了我的研究领域。我的研究小组名为 "鱼类进化发育基因实验室"(Fish Evo Devo Geno Lab),反映了这种多管齐下的研究方法。怎么会有人只想研究一种生物呢?在我的研究生涯中,我研究过斑马鱼、青鳉、慈鲷、鸭嘴鱼和剑尾鱼、鳉鱼、嘎尔鱼、弓鳍鱼等等,更不用说我们还分析了所有的鱼类基因组。在我看来,这正是进化胚胎学研究的核心所在--能够欣赏、研究,有时甚至解开 "无穷无尽的最美形态 "的一些机制基础。与此同时,由于没有一个实验室能保留所有的模式生物,也没有一个实验室能成为所有必要方法的专家,因此比较进化胚胎学研究本质上是合作性的,而且我强烈认为,它还特别具有开放性思维和开阔性思维。随着基因组学、基因组编辑、转基因、体内成像以及包括人工智能在内的计算技术的惊人进步,我们显然将迎来一个伟大的时代。大量的相关数据需要在不同的研究生物体中进行功能测试,以便在基因型和表型之间建立实际的因果联系--自然,EvoDevo 研究将引领这一潮流。由于我们这个领域的跨学科性质,您可能会发现自己经常处于这样的境地--无论是在研究生院、在会议上,还是在您新加入的系里--您的思维方式、想法和研究被认为超出了我们旨在整合的任何专业学科的主流。让您的 EvoDevo 研究既能吸引基础研究,也能吸引更多的应用和生物医学资助机制。保持自信,胸怀大局,相信自己有能力超越个别研究领域的知识孤岛和障眼法。幸运的是,随着泛美进化发育生物学学会和欧洲进化发育生物学学会在过去20年中的成立,我个人认为这是我的知识家园,我们现在有很多机会在我们热闹的社区中建立联系,共同倡导EvoDevo思想。快来加入我们吧
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In the Spotlight—Established researcher

Ingo is a Guest Coeditor of this special issue on Aquatic Models for Biomedical Evo-Devo.

Website: https://www.fishevodevogeno.org/

Google scholar page: https://scholar.google.com/citations?user=xVw8dCAAAAAJ

I studied biology at the University of Konstanz, Germany, and worked as an undergraduate on my first comparative fish genomics projects in the group of Axel Meyer with two fantastic postdocs at the time: John S. Taylor, now faculty at the University of Victoria, Canada, and Walter Salzburger, now faculty at the University of Basel, Switzerland. For my doctoral work, I joined Manfred Schartl and Jean-Nicolas Volff at the University of Würzburg, also in Germany, studying the functional genetic impacts of whole genome duplications on the evolution of vertebrate pigmentation. For my postdoc, I worked in the group of John H. Postlethwait at the University of Oregon in Eugene. John's group had just started to use spotted gar as a genomic outgroup to the teleost fishes and the teleost genome duplication. There, I began developing spotted gar as a developmental and functional genomic model system for vertebrate biology and EvoDevo – work that continues in my laboratory at Michigan State University.

I grew up in provincial Germany as the son of a high school chemistry and physics teacher and a pharmaceutical technician, so I was exposed to the natural sciences early on. Starting in elementary school, I developed a passion for reading about dinosaurs and prehistoric people, years before Jurassic Park made paleontology cool. Thus, although I didn't know the term then, I had an early appreciation for macroevolution. In high school, I kept all kinds of aquarium fishes (can you ever have too many tanks?), while reading about Darwin's Voyage of the Beagle, evolution, and genetics. This fascination kept going and was a reason I chose the University of Konstanz for undergraduate studies because of its strong curricular focus on molecular biology. Working as an undergraduate researcher in the Meyer Lab and being surrounded by an international crew of world-class molecular evolutionary biologists around me – who even used fish models to answer big questions about the deep evolutionary history of vertebrates – was immensely thrilling. Comparing sequences from diverse organisms and reconstructing their evolutionary change across phylogenies, I could practically look back in time! I knew I had found my path. However, sequencing DNA and analyzing genetic information on the computer was not enough for me. Fondly remembering my childhood fish breeding projects and the beauty of watching fish embryos grow, I successively added developmental biology to my research portfolio. The name of my research group, the Fish Evo Devo Geno Lab, reflects this multipronged approach.

Observing the elegance of developmental processes in many different fish species is my happy place. How could anyone ever just want to look at one research organism? Over my research career, I have worked with zebrafish, medaka, cichlids, platyfish and swordtails, killifishes, gars, bowfin, and many others, not to mention all the fish genomes we have analyzed in addition. To me, this is at the core of EvoDevo research – to be able to appreciate, work with, and sometimes unravel some mechanistic underpinnings of the “endless forms most beautiful.” And at the same time, since no single lab can keep all the model organisms or be experts in all necessary methods, comparative EvoDevo research is inherently collaborative, and, I strongly think, also particularly open-minded and mind-opening.

There are clearly great times ahead of us with the incredible progress in genomics, genome editing, transgenesis, in vivo imaging, and computational advances including artificial intelligence. Mountains of correlative data need to be functionally tested in diverse research organisms to make actual causal links between genotype and phenotype – and naturally EvoDevo research will lead the charge. Because of the interdisciplinary nature of our field, you might find yourself frequently in situations – be it in graduate school, at conferences, or in the department you newly joined as faculty – in which your way of thinking, your ideas, and your research is considered outside the mainstream of any of the more specialized disciplines we aim to integrate. Make your EvoDevo research attractive to both basic research as well as to more applied and biomedical funding mechanisms. Stay confident, embrace the big picture, and trust in your abilities to see beyond the intellectual silos and blinders of individual research fields. Fortunately, with the formation of the Pan-American Society for Evolutionary Developmental Biology and the European Society for Evolutionary Developmental Biology over the past 20 years that I personally consider my intellectual homes, we now have plenty of opportunities to network within our buzzing community and jointly advocate for the EvoDevo mindset. Come join us!

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来源期刊
CiteScore
4.80
自引率
9.10%
发文量
63
审稿时长
6-12 weeks
期刊介绍: Developmental Evolution is a branch of evolutionary biology that integrates evidence and concepts from developmental biology, phylogenetics, comparative morphology, evolutionary genetics and increasingly also genomics, systems biology as well as synthetic biology to gain an understanding of the structure and evolution of organisms. The Journal of Experimental Zoology -B: Molecular and Developmental Evolution provides a forum where these fields are invited to bring together their insights to further a synthetic understanding of evolution from the molecular through the organismic level. Contributions from all these branches of science are welcome to JEZB. We particularly encourage submissions that apply the tools of genomics, as well as systems and synthetic biology to developmental evolution. At this time the impact of these emerging fields on developmental evolution has not been explored to its fullest extent and for this reason we are eager to foster the relationship of systems and synthetic biology with devo evo.
期刊最新文献
Issue Information From Egg to Adult: A Developmental Table of the Ant Monomorium pharaonis The Buds of Oscarella lobularis (Porifera, Homoscleromorpha): A New Convenient Model for Sponge Cell and Evolutionary Developmental Biology Issue Information In the Spotlight—Postdoc
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