普通甲壳动物 Liolophura japonica (Lischke, 1873) 染色体级基因组组装。

GigaByte (Hong Kong, China) Pub Date : 2024-04-25 eCollection Date: 2024-01-01 DOI:10.46471/gigabyte.123
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引用次数: 0

摘要

甲壳纲(Polyplacophora)是一种海洋软体动物,从寒冷的水域到热带地区都有分布,在环境中扮演着重要的生态角色。然而,迄今为止只有两个甲壳动物基因组被测序。Liolophura japonica(Lischke,1873 年)是在整个东亚发现的最丰富的多孔软体动物之一。我们的 PacBio HiFi 读数和 Omni-C 测序数据产生了一个 ∼609 Mb 的高质量近染色体级基因组,支架 N50 长度为 37.34 Mb(96.1% BUSCO)。共预测出 28,233 个基因,包括 28,010 个编码蛋白质的基因。重复含量(27.89%)与壳斗科其他物种相似,比汉雷科壳斗鱼基因组低约三倍。这项工作提供的基因组资源将有助于拓展我们对软体动物进化和甲壳动物生态适应性的认识。
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Chromosome-level genome assembly of the common chiton, Liolophura japonica (Lischke, 1873).

Chitons (Polyplacophora) are marine molluscs that can be found worldwide from cold waters to the tropics, and play important ecological roles in the environment. However, only two chiton genomes have been sequenced to date. The chiton Liolophura japonica (Lischke, 1873) is one of the most abundant polyplacophorans found throughout East Asia. Our PacBio HiFi reads and Omni-C sequencing data resulted in a high-quality near chromosome-level genome assembly of ∼609 Mb with a scaffold N50 length of 37.34 Mb (96.1% BUSCO). A total of 28,233 genes were predicted, including 28,010 protein-coding ones. The repeat content (27.89%) was similar to that of other Chitonidae species and approximately three times lower than that of the Hanleyidae chiton genome. The genomic resources provided by this work will help to expand our understanding of the evolution of molluscs and the ecological adaptation of chitons.

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CiteScore
2.60
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0.00%
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审稿时长
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