食用果冻真菌 Dacryopinax spathularia(Dacrymycetaceae)的基因组组装。

IF 1.2 GigaByte (Hong Kong, China) Pub Date : 2024-04-25 eCollection Date: 2024-01-01 DOI:10.46471/gigabyte.120
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引用次数: 0

摘要

可食用的果冻真菌 Dacryopinax spathularia(Dacrymycetaceae)是一种木材腐生菌,在世界各地都能常见到。由于它具有合成长链糖脂的能力,因此在食品添加剂等方面也有应用。在这项研究中,我们结合使用 PacBio HiFi 读数和 Omni-C 数据,完成了 D. spathularia 的基因组组装。基因组大小为 29.2 Mb。它具有较高的序列连续性和完整性,支架 N50 为 1.925 Mb,BUSCO 得分为 92.0%。共预测出 11,510 个编码蛋白质的基因和 474.7 kb 的重复序列(占基因组的 1.62%)。本研究中生成的 D. spathularia 基因组组装为了解其生态学(如木材腐烂能力)、与其他真菌的进化关系以及其独特的生物学特性和在食品工业中的应用提供了宝贵的资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Genome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae).

The edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae) is wood-decaying and can be commonly found worldwide. It has found application in food additives, given its ability to synthesize long-chain glycolipids, among other uses. In this study, we present the genome assembly of D. spathularia using a combination of PacBio HiFi reads and Omni-C data. The genome size is 29.2 Mb. It has high sequence contiguity and completeness, with a scaffold N50 of 1.925 Mb and a 92.0% BUSCO score. A total of 11,510 protein-coding genes and 474.7 kb repeats (accounting for 1.62% of the genome) were predicted. The D. spathularia genome assembly generated in this study provides a valuable resource for understanding their ecology, such as their wood-decaying capability, their evolutionary relationships with other fungi, and their unique biology and applications in the food industry.

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CiteScore
2.60
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审稿时长
5 weeks
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