生物表面活性剂生产细菌 Bacillus velezensis L2D39 的全基因组序列分析

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY Marine genomics Pub Date : 2024-05-07 DOI:10.1016/j.margen.2024.101113
Yihan Ding , Shiping Wei , Gaiyun Zhang
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引用次数: 0

摘要

生物表面活性剂是一种两性分子,因其化学性质和在多种环境条件下的稳定性而具有很高的工业价值。它们已成为新兴生物技术产业中极具吸引力的微生物产品,为合成表面活性剂提供了一种潜在的环保型替代品。如今,多种类型的生物表面活性剂已投入商业应用,广泛应用于医疗保健、农业、石油开采和环境修复等领域。本研究成功分离并鉴定了一种具有生产生物表面活性剂能力的海洋芽孢杆菌(Bacillus velezensis L2D39)。利用 PacBio Sequel HGAP.4 获得了 B. velezensis L2D39 细菌的完整基因组序列,该序列由 4,140,042 个碱基对组成,G + C 含量为 46.2 mol%,包含 4071 个蛋白质编码基因。通过 antiSMASH 检测,确认了与生物表面活性剂相关的基因簇的存在。对完整基因组序列的分析将有助于深入了解该细菌在生物技术和天然产品生物合成方面的潜在应用。
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Complete genome sequence analysis of a biosurfactant-producing bacterium Bacillus velezensis L2D39

Biosurfactants are amphipathic molecules with high industrial values owing to their chemical properties and stability under several environmental conditions. They have become attractive microbial products in the emerging biotechnology industry, offering a potential environmentally-friendly alternative to synthetic surfactants. Nowadays, several types of biosurfactants are commercially available for a wide range of applications in healthcare, agriculture, oil extraction and environmental remediation. In this study, a marine bacterium Bacillus velezensis L2D39 with the capability of producing biosurfactants was successfully isolated and characterized. The complete genome sequence of the bacterium B. velezensis L2D39 was obtained using PacBio Sequel HGAP.4, resulting in a sequence consisting of 4,140,042 base pairs with a 46.2 mol% G + C content and containing 4071 protein-coding genes. The presence of gene clusters associated with biosurfactants was confirmed through antiSMASH detection. The analysis of complete genome sequence will provide insight into the potential applications of this bacterium in biotechnological and natural product biosynthesis.

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来源期刊
Marine genomics
Marine genomics 生物-遗传学
CiteScore
3.60
自引率
5.30%
发文量
50
审稿时长
29 days
期刊介绍: The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
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