取代对分子流动性的限制:1,10-二氰基丁戊烯的案例研究。

IF 3.4 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Journal of Computational Chemistry Pub Date : 2024-05-14 DOI:10.1002/jcc.27379
Bin-Bin Pei, Hongjuan Yang, Cai-Yue Gao, Yuan Man, Yonggang Yang, Si-Dian Li
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引用次数: 0

摘要

我们在本文中表明,1,10-二氰基取代将牛黄烯的副通性限制为 14 种异构体,这些异构体沿单一循环发生异构化。我们通过以下方法研究了 1,10-二氰基丁香油(DCB)的受限通性:(i) 利用自适应自然密度分区(AdNDP)对异构体结构进行键合分析。(ii) 沿势能面(PES)的循环固有反应坐标对异构化进行量子动力学模拟。势能面具有支持 14 种异构体的 14 个等效势阱,这些异构体被支持 14 种过渡态的 14 个等效势垒隔开。因此,在低温条件下,DCB 显现为受阻分子转子,在 14 个势能井中没有任何波函数分散,没有任何核自旋异构体,隧道效应完全可以忽略不计。比较发现这些结果与分子硼转子的结果不同。(iii) 热激活异构化的玻恩-奥本海默分子动力学(BOMD)模拟。(iv) 在过渡态理论(TST)框架下计算速率常数,结果与 BOMD 结果基本一致。(v) 利用带有 TST 速率系数的异构化速率方程模拟平衡动力学。因此,在长时限内,14 种异构体的异构化(每种异构体都具有 Cs 对称性)接近于 "14 Cs → C7v "热平均结构。这是 14 种具有 C7v 整体对称性的同分异构体结构的叠加。通过外推法,DCB 的结果为迄今为止尚未探索的特性(如 C10H10 的平衡动力学)提供了工作假设。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Restriction on molecular fluxionality by substitution: A case study for the 1,10-dicyanobullvalene

We show herein that 1,10-dicyano substitution restricts the paragon fluxionality of bullvalene to just 14 isomers which isomerize along a single cycle. The restricted fluxionality of 1,10-dicyanobullvalene (DCB) is investigated by means of: (i) Bonding analyses of the isomer structures using the adaptive natural density partitioning (AdNDP). (ii) Quantum dynamical simulations of the isomerizations along the cyclic intrinsic reaction coordinate of the potential energy surface (PES). The PES possesses 14 equivalent potential wells supporting 14 isomers which are separated by 14 equivalent potential barriers supporting 14 transition states. Accordingly, at low temperatures, DCB appears as a hindered molecular rotor, without any delocalization of the wavefunction in the 14 potential wells, without any nuclear spin isomers, and with completely negligible tunneling. These results are compared and found to differ from those for molecular boron rotors. (iii) Born-Oppenheimer molecular dynamics (BOMD) simulations of thermally activated isomerizations. (iv) Calculations of the rate constants in the frame of transition state theory (TST) with reasonable agreement achieved with the BOMD results. (v) Simulations of the equilibration dynamics using rate equations for the isomerizations with TST rate coefficients. Accordingly, in the long-time limit, isomerizations of the 14 isomers, each with Cs symmetry, approach the “14 Cs → C7v” thermally averaged structure. This is a superposition of the 14 equally populated isomer structures with an overall C7v symmetry. By extrapolation, the results for DCB yield working hypotheses for so far un-explored properties e.g. for the equilibration dynamics of C10H10.

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来源期刊
CiteScore
6.60
自引率
3.30%
发文量
247
审稿时长
1.7 months
期刊介绍: This distinguished journal publishes articles concerned with all aspects of computational chemistry: analytical, biological, inorganic, organic, physical, and materials. The Journal of Computational Chemistry presents original research, contemporary developments in theory and methodology, and state-of-the-art applications. Computational areas that are featured in the journal include ab initio and semiempirical quantum mechanics, density functional theory, molecular mechanics, molecular dynamics, statistical mechanics, cheminformatics, biomolecular structure prediction, molecular design, and bioinformatics.
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Issue Information DC24: A new density coherence functional for multiconfiguration density‐coherence functional theory Excited state relaxation mechanisms of paracetamol and acetanilide. Stable, aromatic, and electrophilic azepinium ions: Design using quantum chemical methods Assessing small molecule conformational sampling methods in molecular docking
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