分子动力学模拟中的神经网络潜力概述

IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL International Journal of Quantum Chemistry Pub Date : 2024-05-21 DOI:10.1002/qua.27389
Raidel Martin-Barrios, Edisel Navas-Conyedo, Xuyi Zhang, Yunwei Chen, Jorge Gulín-González
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引用次数: 0

摘要

非原位分子动力学(AIMD)是逼真模拟纳米尺度复杂原子系统和过程的关键方法。在 AIMD 中,利用电子结构计算得出的力生成有限温度动态轨迹。在含有大量成分的系统中,典型的 AIMD 运行对计算要求很高。另一方面,机器学习(ML)是人工智能的一个子领域,由一系列算法组成,通过使用输入和输出数据,算法能够分析和预测未来,通过经验进行学习。目前,ML 技术在原子模拟中的主要应用是开发新的原子间势能,以正确描述势能面(PES)。这项技术自 30 年前诞生以来一直在不断进步。ML 电位结合了经典方法和 Ab-initio 方法的优点,即简单函数形式的高效性和第一性原理计算的准确性。在本文中,我们将回顾四代机器学习势能的演变过程及其一些最著名的应用。本综述的重点是基于神经网络的 MLP。此外,我们还介绍了这一主题的最新进展和未来趋势。最后,我们报告了一项科学计量学研究(涵盖 1995-2023 年)的结果,该研究涉及应用于原子模拟的 ML 技术的影响、按地理区域划分的出版物分布情况以及文献中调查的热点话题。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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An overview about neural networks potentials in molecular dynamics simulation

Ab-initio molecular dynamics (AIMD) is a key method for realistic simulation of complex atomistic systems and processes in nanoscale. In AIMD, finite-temperature dynamical trajectories are generated by using forces computed from electronic structure calculations. In systems with high numbers of components a typical AIMD run is computationally demanding. On the other hand, machine learning (ML) is a subfield of the artificial intelligence that consist in a set of algorithms that show learning by experience with the use of input and output data where algorithms are capable of analysing and predicting the future. At present, the main application of ML techniques in atomic simulations is the development of new interatomic potentials to correctly describe the potential energy surfaces (PES). This technique is in constant progress since its inception around 30 years ago. The ML potentials combine the advantages of classical and Ab-initio methods, that is, the efficiency of a simple functional form and the accuracy of first principles calculations. In this article we review the evolution of four generations of machine learning potentials and some of their most notable applications. This review focuses on MLPs based on neural networks. Also, we present a state of art of this topic and future trends. Finally, we report the results of a scientometric study (covering the period 1995–2023) about the impact of ML techniques applied to atomistic simulations, distribution of publications by geographical regions and hot topics investigated in the literature.

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来源期刊
International Journal of Quantum Chemistry
International Journal of Quantum Chemistry 化学-数学跨学科应用
CiteScore
4.70
自引率
4.50%
发文量
185
审稿时长
2 months
期刊介绍: Since its first formulation quantum chemistry has provided the conceptual and terminological framework necessary to understand atoms, molecules and the condensed matter. Over the past decades synergistic advances in the methodological developments, software and hardware have transformed quantum chemistry in a truly interdisciplinary science that has expanded beyond its traditional core of molecular sciences to fields as diverse as chemistry and catalysis, biophysics, nanotechnology and material science.
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