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Unraveling the Sensing Mechanism of Probe BTFMB for H2O2 Detection: A Theoretical Study
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-19 DOI: 10.1002/qua.70034
Li Chunyang, Ma Yinhua, Wang Nan, Chen Zhiyang, Shang Fangjian, Zhang Yan, Zhong Haiyang, Che Li, Liu Jianyong

The level of hydrogen peroxide (H2O2) in the human body is significantly associated with various pathological and physiological states, making it crucial to investigate its fluorescence sensing mechanism for synthesizing effective fluorescent probes. Herein, we used density functional theory and time-dependent density functional theory to investigate the fluorescence sensing mechanism of probe BTMFB for H2O2 detection. The theoretical results show that the fluorescence quenching mechanism of BTMFB is due to a non-radiative decay pathway dominated by the dark nπ* state. Subsequently, BTMFB reacts with H2O2 to form BTMB-OH, resulting in the turn-on fluorescence observed. The calculated potential energy curves indicate that BTFM-OH would undergo the ESIPT process under photoexcitation. The turn-on fluorescence is attributed to a local excitation mode for the bright ππ* state of the BTFM-OH-Keto. The reason for the high selectivity and rapid response speed of BTMFB for the detection of H2O2 is also explained by the calculated binding energy and reaction barrier, respectively.

{"title":"Unraveling the Sensing Mechanism of Probe BTFMB for H2O2 Detection: A Theoretical Study","authors":"Li Chunyang,&nbsp;Ma Yinhua,&nbsp;Wang Nan,&nbsp;Chen Zhiyang,&nbsp;Shang Fangjian,&nbsp;Zhang Yan,&nbsp;Zhong Haiyang,&nbsp;Che Li,&nbsp;Liu Jianyong","doi":"10.1002/qua.70034","DOIUrl":"https://doi.org/10.1002/qua.70034","url":null,"abstract":"<div>\u0000 \u0000 <p>The level of hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) in the human body is significantly associated with various pathological and physiological states, making it crucial to investigate its fluorescence sensing mechanism for synthesizing effective fluorescent probes. Herein, we used density functional theory and time-dependent density functional theory to investigate the fluorescence sensing mechanism of probe BTMFB for H<sub>2</sub>O<sub>2</sub> detection. The theoretical results show that the fluorescence quenching mechanism of BTMFB is due to a non-radiative decay pathway dominated by the dark <i>n</i>π* state. Subsequently, BTMFB reacts with H<sub>2</sub>O<sub>2</sub> to form BTMB-OH, resulting in the turn-on fluorescence observed. The calculated potential energy curves indicate that BTFM-OH would undergo the ESIPT process under photoexcitation. The turn-on fluorescence is attributed to a local excitation mode for the bright ππ* state of the BTFM-OH-Keto. The reason for the high selectivity and rapid response speed of BTMFB for the detection of H<sub>2</sub>O<sub>2</sub> is also explained by the calculated binding energy and reaction barrier, respectively.</p>\u0000 </div>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":"125 7","pages":""},"PeriodicalIF":2.3,"publicationDate":"2025-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143646232","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Advancements in Machine Learning Predicting Activation and Gibbs Free Energies in Chemical Reactions
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-19 DOI: 10.1002/qua.70036
Guo-Jin Cao

Machine learning has revolutionized computational chemistry by improving the accuracy of predicting thermodynamic and kinetic properties like activation energies and Gibbs free energies, accelerating materials discovery and optimizing reaction conditions in both academic and industrial applications. This review investigates the recent strides in applying advanced machine learning techniques, including transfer learning, for accurately predicting both activation energies and Gibbs free energies within complex chemical reactions. It thoroughly provides an extensive overview of the pivotal methods utilized in this domain, including sophisticated neural networks, Gaussian processes, and symbolic regression. Furthermore, the review prominently highlights commonly adopted machine learning frameworks, such as Chemprop, SchNet, and DeepMD, which have consistently demonstrated remarkable accuracy and exceptional efficiency in predicting both thermodynamic and kinetic properties. Moreover, it carefully explores numerous influential studies that have notably reported substantial successes, particularly focusing on predictive performance, diverse datasets, and innovative model architectures that have profoundly contributed to enhancing computational chemistry methodologies. Ultimately, this review clearly underscores the transformative potential of machine learning in significantly improving the predictive power for intricate chemical systems, bearing considerable implications for both cutting-edge theoretical research and practical applications.

{"title":"Advancements in Machine Learning Predicting Activation and Gibbs Free Energies in Chemical Reactions","authors":"Guo-Jin Cao","doi":"10.1002/qua.70036","DOIUrl":"https://doi.org/10.1002/qua.70036","url":null,"abstract":"<p>Machine learning has revolutionized computational chemistry by improving the accuracy of predicting thermodynamic and kinetic properties like activation energies and Gibbs free energies, accelerating materials discovery and optimizing reaction conditions in both academic and industrial applications. This review investigates the recent strides in applying advanced machine learning techniques, including transfer learning, for accurately predicting both activation energies and Gibbs free energies within complex chemical reactions. It thoroughly provides an extensive overview of the pivotal methods utilized in this domain, including sophisticated neural networks, Gaussian processes, and symbolic regression. Furthermore, the review prominently highlights commonly adopted machine learning frameworks, such as Chemprop, SchNet, and DeepMD, which have consistently demonstrated remarkable accuracy and exceptional efficiency in predicting both thermodynamic and kinetic properties. Moreover, it carefully explores numerous influential studies that have notably reported substantial successes, particularly focusing on predictive performance, diverse datasets, and innovative model architectures that have profoundly contributed to enhancing computational chemistry methodologies. Ultimately, this review clearly underscores the transformative potential of machine learning in significantly improving the predictive power for intricate chemical systems, bearing considerable implications for both cutting-edge theoretical research and practical applications.</p>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":"125 7","pages":""},"PeriodicalIF":2.3,"publicationDate":"2025-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/qua.70036","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143646233","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Degree-Based Hybrid Topological Indices and Entropies of Wavy Zigzag Nanoribbons
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-18 DOI: 10.1002/qua.70028
H. M. Nagesh

Graphene nanoribbons (GNRs) have recently accumulated attention as alternative 2D semiconductors due to their remarkable electronic properties. The topological and entropy properties of graphene nanoribbons are very important to fully understand their electronic properties. Graphene nanoribbons with zigzag-shaped edges are narrow strips of graphene characterized by edges that form a zigzag pattern. In this study, we have obtained the analytical expressions for degree-based topological indices to uncover the structural properties of graphene nanoribbons composed of nanographene units with zigzag-shaped edges. Furthermore, we demonstrate the usefulness of different variations of hybrid arithmetic, geometric, harmonic, and Zagreb degree-based topological and entropy indices for these wavy zigzag nanoribbons.

{"title":"Degree-Based Hybrid Topological Indices and Entropies of Wavy Zigzag Nanoribbons","authors":"H. M. Nagesh","doi":"10.1002/qua.70028","DOIUrl":"https://doi.org/10.1002/qua.70028","url":null,"abstract":"<div>\u0000 \u0000 <p>Graphene nanoribbons (GNRs) have recently accumulated attention as alternative 2D semiconductors due to their remarkable electronic properties. The topological and entropy properties of graphene nanoribbons are very important to fully understand their electronic properties. Graphene nanoribbons with zigzag-shaped edges are narrow strips of graphene characterized by edges that form a zigzag pattern. In this study, we have obtained the analytical expressions for degree-based topological indices to uncover the structural properties of graphene nanoribbons composed of nanographene units with zigzag-shaped edges. Furthermore, we demonstrate the usefulness of different variations of hybrid arithmetic, geometric, harmonic, and Zagreb degree-based topological and entropy indices for these wavy zigzag nanoribbons.</p>\u0000 </div>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":"125 7","pages":""},"PeriodicalIF":2.3,"publicationDate":"2025-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143638824","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ab Initio Optimized All-Atom Force Field for Vapor–Liquid Equilibria Simulation of Trifluoromethanesulfonyl Fluoride
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-18 DOI: 10.1002/qua.70035
Wei Liu, Yumei Song, Mi Zhang, Jiageng Xiong, Hua Hou, Baoshan Wang

Trifluoromethanesulfonyl fluoride (CF3SO2F) has attracted great interest as a promising replacement gas for sulfur hexafluoride in view of its excellent dielectric performance. The electronic structures of CF3SO2F and a total of seven dimeric complexes have been characterized theoretically using the M06-2X density functionals with the basis set up to 5-ζ (aug-cc-pV5Z + d) and Grimme's D3 dispersion corrections, the coupled-cluster with single, double, and non-iterative triple energies extrapolated to the complete basis set limit, and the symmetry-adapted perturbation theory (SAPT). The dimeric binding energies are in the range of 1–3 kcal mol−1, depending strongly on the relative orientations of the monomers. The dominant dimerization occurs via the concerted interactions between CF3 and SO2 groups. A classical all-atom force field has been developed successfully for CF3SO2F on the basis of the SAPT-calculated decomposition asymptotes of the dimeric complexes. The vapor–liquid coexistence equilibria have been predicted using the hybrid Gibbs ensemble Monte Carlo algorithm. Theoretical vapor pressures and boiling point of CF3SO2F are in good agreement with the latest experimental data. In comparison with perfluoronitrile, CF3SO2F is superior in terms of liquefaction temperature but inferior in both viscosity and thermal conductivity. The present work sheds new light on the use of CF3SO2F as a promising alternative to dielectric and refrigerant fluids.

{"title":"Ab Initio Optimized All-Atom Force Field for Vapor–Liquid Equilibria Simulation of Trifluoromethanesulfonyl Fluoride","authors":"Wei Liu,&nbsp;Yumei Song,&nbsp;Mi Zhang,&nbsp;Jiageng Xiong,&nbsp;Hua Hou,&nbsp;Baoshan Wang","doi":"10.1002/qua.70035","DOIUrl":"https://doi.org/10.1002/qua.70035","url":null,"abstract":"<div>\u0000 \u0000 <p>Trifluoromethanesulfonyl fluoride (CF<sub>3</sub>SO<sub>2</sub>F) has attracted great interest as a promising replacement gas for sulfur hexafluoride in view of its excellent dielectric performance. The electronic structures of CF<sub>3</sub>SO<sub>2</sub>F and a total of seven dimeric complexes have been characterized theoretically using the M06-2X density functionals with the basis set up to 5-ζ (aug-cc-pV5Z + d) and Grimme's D3 dispersion corrections, the coupled-cluster with single, double, and non-iterative triple energies extrapolated to the complete basis set limit, and the symmetry-adapted perturbation theory (SAPT). The dimeric binding energies are in the range of 1–3 kcal mol<sup>−1</sup>, depending strongly on the relative orientations of the monomers. The dominant dimerization occurs via the concerted interactions between CF<sub>3</sub> and SO<sub>2</sub> groups. A classical all-atom force field has been developed successfully for CF<sub>3</sub>SO<sub>2</sub>F on the basis of the SAPT-calculated decomposition asymptotes of the dimeric complexes. The vapor–liquid coexistence equilibria have been predicted using the hybrid Gibbs ensemble Monte Carlo algorithm. Theoretical vapor pressures and boiling point of CF<sub>3</sub>SO<sub>2</sub>F are in good agreement with the latest experimental data. In comparison with perfluoronitrile, CF<sub>3</sub>SO<sub>2</sub>F is superior in terms of liquefaction temperature but inferior in both viscosity and thermal conductivity. The present work sheds new light on the use of CF<sub>3</sub>SO<sub>2</sub>F as a promising alternative to dielectric and refrigerant fluids.</p>\u0000 </div>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":"125 7","pages":""},"PeriodicalIF":2.3,"publicationDate":"2025-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143638823","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Range-Separated Density Functionals in Predicting Correct Excitation Energies in Gas and Solvent Continuum: A Benchmark Investigation on a Large Set of Molecules
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-18 DOI: 10.1002/qua.70030
Satter Rohman, Parishna Dutta, Rahul Kar

Computationally cost-effective methods with high accuracy are indispensable in the field of quantum chemistry. Recently, descriptor-based tuning methods of range-separated (RS) functionals have attracted theoreticians because of their improved performance in computing various chemical properties. In this article, we have assessed the performance of our newly developed electron localization function (ELF) tuned [J. Comput. Chem. 2017, 38, 2258] and solvent (Sol) tuned [J. Comput. Chem. 2020, 41, 295] RS functionals in the calculation of lowest singlet vertical excitation energies of a large set of molecules in gas and solvent continuum. Moreover, EOM-CCSD benchmark values of excitation energies have been generated in gas and solvents. Notably, the benchmark values under the influence of the solvent continuum have been computed using perturbation theory and density approach (PTED) to take care of solvent effects in EOM-CCSD calculations. This study envisages that our ELF and Sol-tuned functionals can accurately reproduce EOM-CCSD benchmark values. Furthermore, our Sol-tuned functionals can predict the decrease of excitation energies with solvent polarity, which is consistent with EOM-CCSD results.

{"title":"Range-Separated Density Functionals in Predicting Correct Excitation Energies in Gas and Solvent Continuum: A Benchmark Investigation on a Large Set of Molecules","authors":"Satter Rohman,&nbsp;Parishna Dutta,&nbsp;Rahul Kar","doi":"10.1002/qua.70030","DOIUrl":"https://doi.org/10.1002/qua.70030","url":null,"abstract":"<div>\u0000 \u0000 <p>Computationally cost-effective methods with high accuracy are indispensable in the field of quantum chemistry. Recently, descriptor-based tuning methods of range-separated (RS) functionals have attracted theoreticians because of their improved performance in computing various chemical properties. In this article, we have assessed the performance of our newly developed electron localization function (ELF) tuned [<i>J. Comput. Chem.</i> <b>2017</b>, <i>38</i>, 2258] and solvent (Sol) tuned [<i>J. Comput. Chem.</i> <b>2020</b>, <i>41</i>, 295] RS functionals in the calculation of lowest singlet vertical excitation energies of a large set of molecules in gas and solvent continuum. Moreover, EOM-CCSD benchmark values of excitation energies have been generated in gas and solvents. Notably, the benchmark values under the influence of the solvent continuum have been computed using perturbation theory and density approach (PTED) to take care of solvent effects in EOM-CCSD calculations. This study envisages that our ELF and Sol-tuned functionals can accurately reproduce EOM-CCSD benchmark values. Furthermore, our Sol-tuned functionals can predict the decrease of excitation energies with solvent polarity, which is consistent with EOM-CCSD results.</p>\u0000 </div>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":"125 7","pages":""},"PeriodicalIF":2.3,"publicationDate":"2025-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143638821","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Theoretical Exploration of Co and Ln Piroxicam Complexes (Ln = La and Pr), A Quest for Efficient and Safe Therapeutic Agents
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-07 DOI: 10.1002/qua.70021
Riaz Maira, Muhammad Sanwal Khan, Nasir Maha, Muhammad Azam, Ahmad Irfan, Muhammad Asim Raza Basra

Computational chemistry leverages computer simulation programs and theoretical models to anticipate molecular behavior, reactivity, and fascinating properties of metal complexes. In the current study, previously synthesized piroxicam complexes with Co, La, and Pr were investigated by employing and comparing three different functionals. Geometry optimization in gas and solvent, charge distribution and frontier molecular orbital (FMO), reactivity, stability, and Gibbs free energy in solution were investigated for the respective complexes calculated by employing B3LYP, M06, and M06l functionals through the Gaussian 9. The natural population analysis (NPA) revealed metal to ligand electron back-donation where the electrophilic active site primarily resides around the nitrogen and oxygen of the sulphonyl group, as affirmed by molecular electrostatic potential (MEP) diagrams. The global reactivity descriptors were analyzed by the computation of FMOs energies. The complexes were found to be stable, validated by large band gap energy, and relatively nonpolar in nature, which endowed them with the lipophilicity to permeate across biological membranes, corroborated by OSIRIS property analyzed through DATA WARRIOR 6. The theoretical calculations concluded that the studied complexes possess a high drug likeness score, an effective lipophilicity value, and biologically active characteristics with no side effects like tumorigenicity, mutagenicity, and irritability. Moreover, the biological interactions endured by metal complexes in the light of current speculative analysis have also been manipulated, crucial for the rational drug design.

{"title":"Theoretical Exploration of Co and Ln Piroxicam Complexes (Ln = La and Pr), A Quest for Efficient and Safe Therapeutic Agents","authors":"Riaz Maira,&nbsp;Muhammad Sanwal Khan,&nbsp;Nasir Maha,&nbsp;Muhammad Azam,&nbsp;Ahmad Irfan,&nbsp;Muhammad Asim Raza Basra","doi":"10.1002/qua.70021","DOIUrl":"https://doi.org/10.1002/qua.70021","url":null,"abstract":"<div>\u0000 \u0000 <p>Computational chemistry leverages computer simulation programs and theoretical models to anticipate molecular behavior, reactivity, and fascinating properties of metal complexes. In the current study, previously synthesized piroxicam complexes with Co, La, and Pr were investigated by employing and comparing three different functionals. Geometry optimization in gas and solvent, charge distribution and frontier molecular orbital (FMO), reactivity, stability, and Gibbs free energy in solution were investigated for the respective complexes calculated by employing B3LYP, M06, and M06l functionals through the Gaussian 9. The natural population analysis (NPA) revealed metal to ligand electron back-donation where the electrophilic active site primarily resides around the nitrogen and oxygen of the sulphonyl group, as affirmed by molecular electrostatic potential (MEP) diagrams. The global reactivity descriptors were analyzed by the computation of FMOs energies. The complexes were found to be stable, validated by large band gap energy, and relatively nonpolar in nature, which endowed them with the lipophilicity to permeate across biological membranes, corroborated by OSIRIS property analyzed through DATA WARRIOR 6. The theoretical calculations concluded that the studied complexes possess a high drug likeness score, an effective lipophilicity value, and biologically active characteristics with no side effects like tumorigenicity, mutagenicity, and irritability. Moreover, the biological interactions endured by metal complexes in the light of current speculative analysis have also been manipulated, crucial for the rational drug design.</p>\u0000 </div>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":"125 6","pages":""},"PeriodicalIF":2.3,"publicationDate":"2025-03-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143565325","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Classification Method and Rational Adjustment of Asphalt Four Component Molecules Based on Quantum Chemical Calculation
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-03-06 DOI: 10.1002/qua.70023
Rongji Cao, Jie Zhu, Ganyu Xia, Yufan Zhang, Shitong Yang, Hao Feng, Dejian Shen, Chunying Wu, Shengxing Wu

Asphalt is composed of four main components, with over 50 different molecules identified to characterize asphaltenes, resins, aromatics, and saturates. However, there has been a lack of sufficient quantitative demonstration to determine the rationality of these molecules representing their respective components. In this investigation, 64 types of molecules representing the four components of asphalt were collected to develop a more realistic molecular model. Quantum chemical calculations were performed to determine the Mayer bond order, HOMO–LUMO gap, molecular mass, sp2 hybrid carbon atom proportion, atomic charge, electrostatic potential, dipole moment, and molecular polarity index of the asphalt four-component molecules. Based on the statistical analysis of the aforementioned indicators, the rationality of the classification was demonstrated, and appropriate adjustments were made. The results indicated that saturates could be classified by Mayer bond order; Asphaltenes could be classified by the HOMO–LUMO gap and molecular mass; Resins and aromatics could be classified by molecular polarity index, average Mayer bond order, and sp2 hybrid carbon atom proportion. This investigation provided a feasible method for classifying the four components of asphalt at the nanoscale and was expected to provide theoretical guidance for multi-scale investigation on asphalt performance.

{"title":"Classification Method and Rational Adjustment of Asphalt Four Component Molecules Based on Quantum Chemical Calculation","authors":"Rongji Cao,&nbsp;Jie Zhu,&nbsp;Ganyu Xia,&nbsp;Yufan Zhang,&nbsp;Shitong Yang,&nbsp;Hao Feng,&nbsp;Dejian Shen,&nbsp;Chunying Wu,&nbsp;Shengxing Wu","doi":"10.1002/qua.70023","DOIUrl":"https://doi.org/10.1002/qua.70023","url":null,"abstract":"<div>\u0000 \u0000 <p>Asphalt is composed of four main components, with over 50 different molecules identified to characterize asphaltenes, resins, aromatics, and saturates. However, there has been a lack of sufficient quantitative demonstration to determine the rationality of these molecules representing their respective components. In this investigation, 64 types of molecules representing the four components of asphalt were collected to develop a more realistic molecular model. Quantum chemical calculations were performed to determine the Mayer bond order, HOMO–LUMO gap, molecular mass, sp<sup>2</sup> hybrid carbon atom proportion, atomic charge, electrostatic potential, dipole moment, and molecular polarity index of the asphalt four-component molecules. Based on the statistical analysis of the aforementioned indicators, the rationality of the classification was demonstrated, and appropriate adjustments were made. The results indicated that saturates could be classified by Mayer bond order; Asphaltenes could be classified by the HOMO–LUMO gap and molecular mass; Resins and aromatics could be classified by molecular polarity index, average Mayer bond order, and sp<sup>2</sup> hybrid carbon atom proportion. This investigation provided a feasible method for classifying the four components of asphalt at the nanoscale and was expected to provide theoretical guidance for multi-scale investigation on asphalt performance.</p>\u0000 </div>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":"125 6","pages":""},"PeriodicalIF":2.3,"publicationDate":"2025-03-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143564616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Density Functional Study on the Structures and Adsorption Properties of PtAgn (n = 1–16) Clusters
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-21 DOI: 10.1002/qua.70022
Zhimei Tian, Dongyang He, Jingzhe Sun, Tao Zhang, Chongfu Song

The structures and properties of PtAgn (n = 1–16) clusters have been studied by density functional theory (DFT). The Tpssh/def2-TZVP method is chosen in this work. Calculations reveal that the structures of PtAgn (n = 1–16) clusters are planar structures when n = 1–3, while they present three-dimensional structures when n = 4–16. The coordination number of the Pt atom in PtAgn (n = 1–16) clusters are in the range of 1–11. Pt atoms in PtAgn (n = 1–16) clusters prefer to locate in the centers of the structures. The electronic structures are compared with available experimental and theoretical data. The stability analysis manifests that the clusters have odd-even stability properties. The study of catalytic properties on PtAgn (n = 1–16) clusters perform similar interactions with one CO molecule. The Pt atom favors interacting with the carbon terminal of the CO molecule. According to the thermodynamic property study, the adsorption reactions of PtAgn (n = 1–16) and CO are all spontaneous. The stability of PtAgnCO (n = 1–16) clusters present odd-even properties. The projected density of states (PDOS) study reveals that the orbital hybridization phenomenon is present between the Pt and C atoms in the PtAg6CO cluster.

{"title":"Density Functional Study on the Structures and Adsorption Properties of PtAgn (n = 1–16) Clusters","authors":"Zhimei Tian,&nbsp;Dongyang He,&nbsp;Jingzhe Sun,&nbsp;Tao Zhang,&nbsp;Chongfu Song","doi":"10.1002/qua.70022","DOIUrl":"https://doi.org/10.1002/qua.70022","url":null,"abstract":"<div>\u0000 \u0000 <p>The structures and properties of PtAg<sub><i>n</i></sub> (<i>n</i> = 1–16) clusters have been studied by density functional theory (DFT). The Tpssh/def2-TZVP method is chosen in this work. Calculations reveal that the structures of PtAg<sub><i>n</i></sub> (<i>n</i> = 1–16) clusters are planar structures when <i>n</i> = 1–3, while they present three-dimensional structures when <i>n</i> = 4–16. The coordination number of the Pt atom in PtAg<sub><i>n</i></sub> (<i>n</i> = 1–16) clusters are in the range of 1–11. Pt atoms in PtAg<sub><i>n</i></sub> (<i>n</i> = 1–16) clusters prefer to locate in the centers of the structures. The electronic structures are compared with available experimental and theoretical data. The stability analysis manifests that the clusters have odd-even stability properties. The study of catalytic properties on PtAg<sub><i>n</i></sub> (<i>n</i> = 1–16) clusters perform similar interactions with one CO molecule. The Pt atom favors interacting with the carbon terminal of the CO molecule. According to the thermodynamic property study, the adsorption reactions of PtAg<sub><i>n</i></sub> (<i>n</i> = 1–16) and CO are all spontaneous. The stability of PtAg<sub><i>n</i></sub>CO (<i>n</i> = 1–16) clusters present odd-even properties. The projected density of states (PDOS) study reveals that the orbital hybridization phenomenon is present between the Pt and C atoms in the PtAg<sub>6</sub>CO cluster.</p>\u0000 </div>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":"125 5","pages":""},"PeriodicalIF":2.3,"publicationDate":"2025-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143455766","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring Graphitic Carbon Nitride as Novel Drug Delivery System for Hesperetin (Anticancer Drug): Insights From DFT Calculations and Molecular Dynamics Simulations
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-20 DOI: 10.1002/qua.70018
Mubashar Ilyas, Maroof Ahmad Khan, Shehwas Kalsoom, Muhammad Abbas, Mehvish Perveen, Javed Iqbal, Shabbir Muhammad, Hui Li

In the present work, density functional theory (DFT) and molecular dynamics (MD) simulations were employed to explore the interaction between Hesperetin (HST), an anticancer drug, and 2D graphitic carbon nitride (GRP) nanocarrier designed for targeted drug delivery. The B3LYP/B3LYP-D3 functionals and the 6-31G (d,p) basis set were used for DFT calculations in both gaseous and solvent environments. The outcomes reveal exothermic adsorption (adsorption energy = −0.18 eV) of HST on the GRP nanocarrier, suggesting increased stability for enhanced drug delivery in biological systems. Calculations of orbital energy and density of state (DOS) demonstrate a reduced HOMO–LUMO energy gap (3.15 eV) of GRP upon interaction with HST. In an aqueous medium, the HST@GRP complex exhibits a higher dipole moment (3.48 D) compared to the gas phase (1.60 D), facilitating effective drug transportation. Charge decomposition analysis (CDA) identifies an orbital overlap between HST and GRP, supported by natural bond orbitals showing evidence of charge transfer. Computational UV–visible spectra closely match with experimental data. The elucidation of the photoinduced electron transfer (PET) mechanism explains fluorescence quenching. In summary, these findings suggest the potential of GRP as an efficient nanocarrier for HST drug delivery, encouraging further exploration of 2D nanomaterials in drug transport systems.

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引用次数: 0
Sustainable Synthesis, DFT, Docking and In Vitro Evaluation of 6-Mercaptopurine Syringic Acid Cocrystal: A Potent Drug for Breast Cancer Therapy
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-20 DOI: 10.1002/qua.70020
Thangamathi Rajendran, Azar Zochedh, Kaliraj Chandran, Bandar Ali Al-Asbahi, Yedluri Anil Kumar, Athimoolam Shunmuganarayanan, Asath Bahadur Sultan

The 6-mercaptopurine syringic acid (6MPSY) a new drug–drug cocrystal has been synthesized by the neat grinding method. The prepared cocrystal 6MPSY has been screened by the powder x-ray diffraction procedure and the single phase was confirmed. Using density functional theory with B3LYP/6-311++G (d, p) source set, the structural parameters were computed and associated with the structural parameters of the 6-mercaptopurine molecule and syringic acid molecule reported earlier exhibit good agreement. Experimental FTIR and UV–vis spectra were documented to identify and analyze the group vibrational frequencies and electronic behavior of the cocrystal. The NBO study was accomplished and the inter- and intra-molecular interactions were established. The inspection of the topological (MEP, ELF, LOL) and non-covalent (RDG, IRI, DORI) contacts has exposed diverse groups of inter- and intra-molecular links on the source of electron localization density and color gauge pointer, respectively. Mulliken and natural atomic charges have been calculated and depicted. Fukui studies gave the reactive site with high f+ and f for C10, C17, C33, and H14 of the drug–drug cocrystal. The FMO analysis exhibits a low energy gap of 3.7612 eV that shows the efficiency of the drug–drug cocrystal in terms of chemical reactivity and stability. In addition, the thermodynamical parameters were calculated. The anti-breast cancer activity of 6MPSY was investigated through in silico and in vitro analysis. The docking outcomes of 6MPSY range between −7.5 and −9.3 kcal/mol, and the calculated IC50 value in MDA-MB-231 breast cancer cells was 83.2 μg/mL.

{"title":"Sustainable Synthesis, DFT, Docking and In Vitro Evaluation of 6-Mercaptopurine Syringic Acid Cocrystal: A Potent Drug for Breast Cancer Therapy","authors":"Thangamathi Rajendran,&nbsp;Azar Zochedh,&nbsp;Kaliraj Chandran,&nbsp;Bandar Ali Al-Asbahi,&nbsp;Yedluri Anil Kumar,&nbsp;Athimoolam Shunmuganarayanan,&nbsp;Asath Bahadur Sultan","doi":"10.1002/qua.70020","DOIUrl":"https://doi.org/10.1002/qua.70020","url":null,"abstract":"<div>\u0000 \u0000 <p>The 6-mercaptopurine syringic acid (6MPSY) a new drug–drug cocrystal has been synthesized by the neat grinding method. The prepared cocrystal 6MPSY has been screened by the powder x-ray diffraction procedure and the single phase was confirmed. Using density functional theory with B3LYP/6-311++G (d, p) source set, the structural parameters were computed and associated with the structural parameters of the 6-mercaptopurine molecule and syringic acid molecule reported earlier exhibit good agreement. Experimental FTIR and UV–vis spectra were documented to identify and analyze the group vibrational frequencies and electronic behavior of the cocrystal. The NBO study was accomplished and the inter- and intra-molecular interactions were established. The inspection of the topological (MEP, ELF, LOL) and non-covalent (RDG, IRI, DORI) contacts has exposed diverse groups of inter- and intra-molecular links on the source of electron localization density and color gauge pointer, respectively. Mulliken and natural atomic charges have been calculated and depicted. Fukui studies gave the reactive site with high <i>f</i><sup>+</sup> and <i>f</i><sup>−</sup> for C10, C17, C33, and H14 of the drug–drug cocrystal. The FMO analysis exhibits a low energy gap of 3.7612 eV that shows the efficiency of the drug–drug cocrystal in terms of chemical reactivity and stability. In addition, the thermodynamical parameters were calculated. The anti-breast cancer activity of 6MPSY was investigated through in silico and in vitro analysis. The docking outcomes of 6MPSY range between −7.5 and −9.3 kcal/mol, and the calculated IC<sub>50</sub> value in MDA-MB-231 breast cancer cells was 83.2 μg/mL.</p>\u0000 </div>","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":"125 5","pages":""},"PeriodicalIF":2.3,"publicationDate":"2025-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143447005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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International Journal of Quantum Chemistry
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