苯甲酰氯衍生化推进了珊瑚礁溶解极性代谢物的定量。

IF 3.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Journal of Proteome Research Pub Date : 2024-05-23 DOI:10.1021/acs.jproteome.4c00049
Brianna M. Garcia, Cynthia C. Becker, Laura Weber, Gretchen J. Swarr, Melissa C. Kido Soule, Amy Apprill* and Elizabeth B. Kujawinski*, 
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引用次数: 0

摘要

从微生物到哺乳动物,细胞外化学线索构成了海洋生物的大部分生命语言。这种化学物质库的变化是整个生态系统健康的无形信号,也是对这种微调平衡的破坏。在珊瑚礁中,参与维持珊瑚礁平衡的化学物质的范围和数量在很大程度上都是未知的。涉及小分子、极性分子(构成可溶性溶解有机碳的主要成分)的过程,传统技术往往难以捕捉。我们采用基于质谱的化学衍生化和靶向外代谢组学方法,对美属维尔京群岛五个珊瑚礁上的极性溶解相代谢物进行了量化。我们对 45 种极性外代谢物进行了量化,证明了它们的空间变异性,并从地理和海底覆盖差异的角度对这些发现进行了背景分析。通过将我们的结果与之前发表的珊瑚礁外代谢组进行比较,我们展示了 23 种代谢物的新定量,其中包括中心碳代谢化合物(如谷氨酸)和新型代谢物(如高丝氨酸甜菜碱)。我们强调了基于化学衍生化的外代谢组学在量化珊瑚礁上的易变化学线索和测量对环境压力因素的分子水平反应方面的巨大潜力。总之,提高我们对珊瑚礁外代谢物的组成和动态的了解对于有效的生态系统监测和管理策略至关重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Benzoyl Chloride Derivatization Advances the Quantification of Dissolved Polar Metabolites on Coral Reefs

Extracellular chemical cues constitute much of the language of life among marine organisms, from microbes to mammals. Changes in this chemical pool serve as invisible signals of overall ecosystem health and disruption to this finely tuned equilibrium. In coral reefs, the scope and magnitude of the chemicals involved in maintaining reef equilibria are largely unknown. Processes involving small, polar molecules, which form the majority components of labile dissolved organic carbon, are often poorly captured using traditional techniques. We employed chemical derivatization with mass spectrometry-based targeted exometabolomics to quantify polar dissolved phase metabolites on five coral reefs in the U.S. Virgin Islands. We quantified 45 polar exometabolites, demonstrated their spatial variability, and contextualized these findings in terms of geographic and benthic cover differences. By comparing our results to previously published coral reef exometabolomes, we show the novel quantification of 23 metabolites, including central carbon metabolism compounds (e.g., glutamate) and novel metabolites such as homoserine betaine. We highlight the immense potential of chemical derivatization-based exometabolomics for quantifying labile chemical cues on coral reefs and measuring molecular level responses to environmental stressors. Overall, improving our understanding of the composition and dynamics of reef exometabolites is vital for effective ecosystem monitoring and management strategies.

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来源期刊
Journal of Proteome Research
Journal of Proteome Research 生物-生化研究方法
CiteScore
9.00
自引率
4.50%
发文量
251
审稿时长
3 months
期刊介绍: Journal of Proteome Research publishes content encompassing all aspects of global protein analysis and function, including the dynamic aspects of genomics, spatio-temporal proteomics, metabonomics and metabolomics, clinical and agricultural proteomics, as well as advances in methodology including bioinformatics. The theme and emphasis is on a multidisciplinary approach to the life sciences through the synergy between the different types of "omics".
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