通过单量子和三量子核磁共振联合探测琼脂糖凝胶中钠离子的流动性。

IF 4.2 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Methods Pub Date : 2024-05-21 DOI:10.1016/j.ymeth.2024.05.015
Evgeny Nimerovsky , Daniel Sieme , Nasrollah Rezaei-Ghaleh
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引用次数: 0

摘要

金属离子(包括生物中普遍存在的钠离子)可以调节静电相互作用,这种相互作用经常涉及细胞中凝聚区的稳定性。对生物分子凝聚体内部异质离子动态的定量表征需要新的实验方法。在此,我们开发了一种基于 23Na NMR 驰豫的综合方法,以琼脂糖凝胶为模型系统,探测其内部钠离子的动态。我们利用自旋-3/2 23Na 原子核的电四极矩,通过结合单量子和三量子过滤 23Na NMR 驰豫方法,析出凝胶内不同钠离子群的驰豫贡献。我们确定了钠离子的三个种群:一个具有双指数弛豫的种群代表慢动作体系中的离子,两个具有单指数弛豫但弛豫速率不同的种群。我们的研究证明了钠离子在琼脂糖凝胶中的动态异质性,并提出了一种新的实验方法,用于监测钠离子和其他自旋 3/2 离子(如氯离子)在凝聚环境中的动态。
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Mobility of sodium ions in agarose gels probed through combined single- and triple-quantum NMR

Metal ions, including biologically prevalent sodium ions, can modulate electrostatic interactions frequently involved in the stability of condensed compartments in cells. Quantitative characterization of heterogeneous ion dynamics inside biomolecular condensates demands new experimental approaches. Here we develop a 23Na NMR relaxation-based integrative approach to probe dynamics of sodium ions inside agarose gels as a model system. We exploit the electric quadrupole moment of spin-3/2 23Na nuclei and, through combination of single-quantum and triple-quantum-filtered 23Na NMR relaxation methods, disentangle the relaxation contribution of different populations of sodium ions inside gels. Three populations of sodium ions are identified: a population with bi-exponential relaxation representing ions within the slow motion regime and two populations with mono-exponential relaxation but at different rates. Our study demonstrates the dynamical heterogeneity of sodium ions inside agarose gels and presents a new experimental approach for monitoring dynamics of sodium and other spin-3/2 ions (e.g. chloride) in condensed environments.

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来源期刊
Methods
Methods 生物-生化研究方法
CiteScore
9.80
自引率
2.10%
发文量
222
审稿时长
11.3 weeks
期刊介绍: Methods focuses on rapidly developing techniques in the experimental biological and medical sciences. Each topical issue, organized by a guest editor who is an expert in the area covered, consists solely of invited quality articles by specialist authors, many of them reviews. Issues are devoted to specific technical approaches with emphasis on clear detailed descriptions of protocols that allow them to be reproduced easily. The background information provided enables researchers to understand the principles underlying the methods; other helpful sections include comparisons of alternative methods giving the advantages and disadvantages of particular methods, guidance on avoiding potential pitfalls, and suggestions for troubleshooting.
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