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From wrinkles to malignancy: small-molecule-mediated stem cell approaches in skin aging. 从皱纹到恶性肿瘤:小分子介导的干细胞在皮肤衰老中的应用。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-02-06 DOI: 10.1016/j.ymeth.2026.02.003
Abdullah Alkhammash, Ghallab Alotaibi

Skin aging is driven by the progressive exhaustion of stem cell niches, epigenetic drift, and accumulation of senescent cells, which together promote both aesthetic decline and a pro-tumorigenic microenvironment. This review focuses on the emerging methodological theme of small-molecule-mediated reprogramming as a strategy to restore skin homeostasis. We evaluated the shift from traditional regenerative medicine toward targeted chemical modulation, focusing on the use of small-molecule cocktails to induce partial reprogramming and rejuvenate aged stem cell populations without erasing cellular identity. Central to this theme is the integration of high-throughput virtual screening and AI-driven predictive modeling to identify potent modulators of Wnt, Notch, and TGF-β pathways. We further bridge the gap between preclinical innovation and clinical application by analyzing "serious clinical studies" with proven efficacy, including randomized controlled trials of stem cell-derived secretomes and clinically validated small molecules, such as tretinoin and firming peptides. By contextualizing advanced delivery systems, including microneedles and stimuli-responsive nanoparticles, within this reprogramming framework, we demonstrate how spatially controlled interventions can optimize clinical outcomes. This review provides a unified perspective on how the intersection of computational drug discovery and niche-targeted pharmacology is moving small-molecule skin rejuvenation from theoretical potential to widespread clinical translation.

皮肤老化是由干细胞龛的逐渐衰竭、表观遗传漂移和衰老细胞的积累驱动的,这些因素共同促进了审美下降和促肿瘤发生的微环境。这篇综述的重点是小分子介导的重编程作为一种恢复皮肤稳态的策略的方法学主题。我们评估了从传统再生医学到靶向化学调节的转变,重点是使用小分子鸡尾酒来诱导部分重编程并在不消除细胞身份的情况下使衰老的干细胞群体恢复活力。该主题的核心是整合高通量虚拟筛选和人工智能驱动的预测建模,以识别Wnt、Notch和TGF-β通路的有效调节剂。我们通过分析“严肃的临床研究”,包括干细胞衍生的分泌组和临床验证的小分子,如维甲酸和紧致肽,进一步弥合临床前创新和临床应用之间的差距。通过将包括微针和刺激反应纳米颗粒在内的先进递送系统置于这种重编程框架中,我们展示了空间控制干预如何优化临床结果。这篇综述提供了一个统一的观点,即计算药物发现和利基靶向药理学的交集如何将小分子皮肤再生从理论潜力转移到广泛的临床转化。
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引用次数: 0
An optimized method for establishing experimental rat periodontitis using "double-ligature" technique. 采用“双结扎”技术建立实验性大鼠牙周炎的优化方法。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-02-03 DOI: 10.1016/j.ymeth.2026.01.010
Cheng Hu, Haixia Wang, Yuwei Liao, Xiaoli Hu

Establishing stable and dependable animal models of experimental periodontitis is critical in advancing our understanding of the etiology, clinical diagnosis, and treatment of periodontitis. However, conventional silk ligation methods for inducing periodontitis in rats have limitations, with silk thread detachment being a major concern. In this study, we established a reliable rat periodontitis model using a novel "double-ligature" technique combining silk sutures with orthodontic wires, augmented by a high-sugar diet. Thirty rats were randomized into five groups: control, wire-only, silk-only, wire+silk, and wire+silk+sugar. After 2 weeks, the wire+silk+sugar group demonstrated significantly elevated clinical indices (sulcus bleeding index, probing depth, plaque index) versus controls (*p* < 0.05), alongside severe alveolar bone resorption quantified by micro-CT. Molecular analyses revealed upregulated inflammatory gene expression (e.g., TNF-α, IL-1β) in double-ligature groups. Histology confirmed extensive immune infiltration and periodontal ligament disruption. The combined approach induced robust periodontitis with 103% greater CEJ-ABC distance versus controls, while TRAP staining revealed 5-fold increased osteoclast activity. By this "double-ligature" technique, the pathogenesis of periodontitis can be studied on the one hand, and the therapeutic effect of biomaterials on the alveolar bone defects caused by periodontitis can be verified on the other hand. This reproducible method overcomes traditional silk ligature limitations (e.g., thread detachment) and provides a foundation for translational periodontitis research.

建立稳定可靠的实验性牙周炎动物模型对于提高我们对牙周炎的病因、临床诊断和治疗的认识至关重要。然而,传统的丝结扎方法诱导大鼠牙周炎有局限性,丝线脱离是一个主要问题。在这项研究中,我们采用一种新型的“双结扎”技术,将丝缝线与正畸线结合起来,并辅以高糖饮食,建立了可靠的大鼠牙周炎模型。30只大鼠随机分为对照组、纯丝组、纯丝组、丝 + 丝组和丝 + 丝 + 糖组。2 周后,丝 + 丝 + 糖组的临床指标(沟出血指数、探查深度、斑块指数)明显高于对照组(*p*)
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引用次数: 0
DNA-regulated structural engineering of metal nanomaterials: A strategy for advanced optical biosensing dna调控的金属纳米材料结构工程:一种先进的光学生物传感策略
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-02-03 DOI: 10.1016/j.ymeth.2026.02.001
Junyao Li , Ling Cai , Peiming Liu , Rui Zhang , Wenrong Cai , Datong Wu , Laidi Xu , Yong Kong
The development of highly sensitive optical biosensors has emerged as a focal point in chemical research, exerting a profound influence on numerous fields related to the national economy and public welfare. Owing to their dual nanostructural and metallic properties, metal nanomaterials exhibit certain distinctive optical properties. Among them, localized surface plasmon resonance (LSPR), surface-enhanced Raman scattering (SERS), and fluorescence emission are particularly prominent. Therefore, metal nanomaterials possess significant potential to enhance the analytical performance of optical biosensors. Compared to peptides and proteins, DNA demonstrates remarkable superiority in terms of the diversity of length, sequence, backbone structure, and modification groups. Integrating DNA with metal nanomaterials provides a prerequisite for accurately identifying targets and precisely regulating metal nanomaterials. Effectively combining the superior properties of DNA and metal nanomaterials represents a critical scientific challenge in facilitating the development of highly sensitive optical analytical approaches. Exploring novel strategies to regulate the optical properties of metal nanomaterials can provide more opportunities for developing high-performance optical biosensors. In this review, the regulation modes of DNA with metal nanomaterials can be summarized into three parts i.e.: the morphological evolution of DNA-guided metal nanomaterials, the assembly of DNA with metal nanomaterials, and the formation of DNA-templated metal nanomaterials. For each part, typical applications have been displayed based on regulating the optical properties of metal nanomaterials via DNA. Furthermore, perspectives and challenges are also discussed at the end of the review.
高灵敏度光学生物传感器的开发已成为化学研究领域的一个热点,对涉及国民经济和社会福利的诸多领域产生深远的影响。金属纳米材料由于具有纳米结构和金属的双重性质,表现出某些独特的光学性质。其中,局部表面等离子体共振(LSPR)、表面增强拉曼散射(SERS)和荧光发射尤为突出。因此,金属纳米材料在提高光学生物传感器的分析性能方面具有巨大的潜力。与肽和蛋白质相比,DNA在长度、序列、主链结构和修饰基团的多样性方面表现出显著的优势。DNA与金属纳米材料的结合为准确识别靶标和精确调控金属纳米材料提供了前提条件。有效地结合DNA和金属纳米材料的优越特性是促进高灵敏度光学分析方法发展的关键科学挑战。探索调节金属纳米材料光学特性的新策略可以为开发高性能光学生物传感器提供更多机会。本文将金属纳米材料对DNA的调控模式归纳为DNA引导金属纳米材料的形态演化、DNA与金属纳米材料的组装和DNA模板化金属纳米材料的形成三部分。对于每个部分,已经展示了基于通过DNA调节金属纳米材料光学特性的典型应用。此外,本文最后还讨论了前景和挑战。
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引用次数: 0
Ultra-sensitive diagnostic platform utilizing gold nanoparticle integrated in a freestanding hydrogel matrix. 利用金纳米颗粒集成在独立水凝胶基质中的超灵敏诊断平台。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-02-02 DOI: 10.1016/j.ymeth.2026.02.002
Omar M Rahman, Shengxi Lan, Andrea M A Pizano, Woosuk Chung, Younghun Kim, Dae Kun Hwang

Fluorescence-based analysis for protein detection has been widely adopted; however, they fall short in achieving ultra-sensitive detection because of their inherently low signal-to-noise ratio at sub-picomolar concentrations. To overcome this limitation, signal amplifying materials such as gold nanoparticles (AuNPs) have been integrated into various detection platforms to enhance fluorescence signals. However, fabrication of such AuNP integrated platforms remains complex, often requiring sophisticated fabrication steps, yet none approach the ultra-sensitive detection range of 100 fg mL-1. In this study, we enabled analysis of captured protein/antibody at 100 fg mL-1 concentrations through fluorescence signals utilizing freestanding gold nanoparticle integrated freestanding hydrogel platforms. The platform is fabricated by integrating AuNPs into the hydrogel matrix using a single-step photolithographic technique. The integrated AuNPs significantly enhanced the fluorescence signals compared to controls. Notably, at fg mL-1 levels of fluorophore, the AuNP integrated hydrogels produced a robust optical signal in contrast to negligible responses observed in controls. The platform's versatility was validated using tumor necrosis factor-alpha antibody (TNF-α Ab), achieving detection at 100 fg mL-1. By synergizing the hydrogels' porous structure with AuNPs' signal amplification, this platform successfully achieves fluorescence-based ultra-sensitive protein/antibody detection.

基于荧光的蛋白质检测分析已被广泛采用;然而,由于它们在亚皮摩尔浓度下固有的低信噪比,它们无法实现超灵敏的检测。为了克服这一限制,信号放大材料如金纳米颗粒(AuNPs)已被集成到各种检测平台中以增强荧光信号。然而,这种AuNP集成平台的制造仍然很复杂,通常需要复杂的制造步骤,但没有一个达到100 fg mL-1的超灵敏探测范围。在这项研究中,我们利用独立金纳米颗粒集成独立水凝胶平台,通过荧光信号分析了100 fg mL-1浓度下捕获的蛋白质/抗体。该平台是通过使用单步光刻技术将aunp集成到水凝胶基质中来制造的。与对照组相比,整合的AuNPs显著增强了荧光信号。值得注意的是,在荧光团的fg mL-1水平下,unasp集成水凝胶产生了强大的光信号,而在对照组中观察到的响应可以忽略不计。使用肿瘤坏死因子-α抗体(TNF-α Ab)验证了该平台的多功能性,实现了100 fg mL-1的检测。通过水凝胶的多孔结构与AuNPs的信号放大协同作用,该平台成功实现了基于荧光的超敏感蛋白/抗体检测。
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引用次数: 0
Syntenins at the crossroads of host–virus interactions 在宿主-病毒相互作用的十字路口的联蛋白
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-27 DOI: 10.1016/j.ymeth.2026.01.009
Yevheniia Kharkivska , Olha Shkel , Yun Kyung Kim
Syntenin is a multifunctional PDZ-domain adaptor protein that orchestrates membrane trafficking, cytoskeletal remodeling, and exosome biogenesis. Initially identified as a syndecan-binding molecule, syntenin has since emerged as a central hub connecting membrane receptors to intracellular signaling pathways that regulate adhesion, motility, immune signaling, and cellular plasticity. While extensively studied in cancer and neural development, recent discoveries reveal that a wide range of viruses exploit syntenin to facilitate their replication, assembly, or dissemination. This review consolidates current evidence across diverse viral infections to elucidate the molecular mechanisms underlying the interaction between syntenin and viruses. Coronaviruses utilize syntenin to link PDZ-binding motifs to p38 MAPK-driven inflammation and endosomal entry. Papillomaviruses and Epstein–Barr virus hijack the CD63-syntenin-ALIX complex to control vesicle-mediated trafficking. Hepatitis C virus employs it to secrete E2-coated, antibody-resistant exosomes. Dengue virus harnesses its mosquito homolog AeSyntenin to package sfRNA for transmission. Human T-cell leukemia virus type 1 employs its Tax-1 oncoprotein to bind the PDZ domains of syntenin, remodel extracellular vesicle cargo, and promote viral spread. In contrast, during human immunodeficiency virus infection, syntenin restricts viral fusion at the plasma membrane, though the nucleocapsid mimics its PDZ tandem to promote virion release. Collectively, these findings establish syntenin as a dynamic regulator at the host–virus interface, capable of exerting both proviral and antiviral effects. Emerging pharmacological strategies targeting syntenin PDZ domains further underscore its potential as a broad-spectrum, host-directed antiviral target.
Syntenin是一种多功能的pdz结构域连接蛋白,它协调膜运输、细胞骨架重塑和外泌体的生物发生。syntenin最初被认为是一种syndeca结合分子,后来被认为是连接膜受体和细胞内信号通路的中心枢纽,这些信号通路调节粘附、运动、免疫信号和细胞可塑性。虽然在癌症和神经发育方面进行了广泛的研究,但最近的发现表明,广泛的病毒利用syntenin来促进它们的复制、组装或传播。这篇综述整合了目前不同病毒感染的证据,以阐明syntenin和病毒之间相互作用的分子机制。冠状病毒利用syntenin将pdz结合基序与p38 mapk驱动的炎症和内体进入连接起来。乳头瘤病毒和eb病毒劫持CD63-syntenin-ALIX复合物来控制囊泡介导的转运。丙型肝炎病毒利用它分泌e2包被的抗抗体外泌体。登革热病毒利用其蚊子同系物AeSyntenin包装sfRNA以供传播。1型人t细胞白血病病毒利用其tax1癌蛋白结合syntenin的PDZ结构域,重塑细胞外囊泡货物,促进病毒传播。相反,在人类免疫缺陷病毒感染期间,syntenin限制病毒在质膜上的融合,尽管核衣壳模仿其PDZ串联促进病毒粒子释放。总之,这些发现确定了syntenin作为宿主-病毒界面的动态调节剂,能够发挥前病毒和抗病毒作用。针对syntenin PDZ结构域的新药理学策略进一步强调了其作为广谱、宿主定向抗病毒靶点的潜力。
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引用次数: 0
Nanomaterial-based electrochemical sensors for phenolic antioxidants in foods and beverages: From design to device translation 用于食品和饮料中酚类抗氧化剂的纳米材料电化学传感器:从设计到设备转换。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-24 DOI: 10.1016/j.ymeth.2026.01.008
Angga Hermawan , Asmi Aris , Munawar Khalil , Ni Luh Wulan Septiani , Teti Estiasih , Hamidie Ronald Daniel Ray , Miguel Palma , Widiastuti Setyaningsih
Nanomaterial-enabled electrochemical sensors are nearing the performance and practicality needed for routine, on-site monitoring of phenolic compounds in foods and beverages. Advances in nanomaterial dimensionality and hybrid architectures, from atomically doped nanoparticles and zero-dimensional clusters to two- and three-dimensional porous frameworks, have enhanced electron-transfer kinetics, expanded electroactive surface area, and enabled more selective surface chemistries. These gains align with progress in molecular recognition using enzymes, aptamers, molecularly imprinted polymers, and permselective antifouling coatings, as well as electrode-engineering strategies that translate nanoscale activity into reliable printed-electrodes. Although laboratory detection limits are often impressive (micromolar to low-nanomolar in controlled media), challenges remain in reproducibility, shelf life, and performance in complex matrices such as wine, olive oil, and fermented foods. Closing these gaps requires integrated solutions that unite printable, stable nanomaterial inks with simple on-cartridge sample conditioning, modular recognition layers, and robust on-board calibration and data-handling routines. To enable practical deployment, we propose a development pathway focused on scalable manufacturing and quality control of nanomaterial inks and electrodes, harmonized validation against chromatographic reference methods, durable antifouling and self-cleaning strategies, and an ecosystem approach that uses smartphone connectivity and cloud analytics to convert electrochemical signals into traceable, defensible decisions for industry, regulators, and consumers.
纳米材料驱动的电化学传感器的性能和实用性已经接近于日常现场监测食品和饮料中的酚类化合物所需要的水平。纳米材料维度和混合结构的进步,从原子掺杂的纳米颗粒和零维簇到二维和三维多孔框架,增强了电子转移动力学,扩大了电活性表面积,并实现了更多的选择性表面化学。这些成果与使用酶、适体、分子印迹聚合物和超选择性防污涂层的分子识别以及将纳米级活性转化为可靠印刷电极的电极工程策略的进展相一致。尽管实验室检测限通常令人印象深刻(受控介质中的微摩尔到低纳摩尔),但在葡萄酒、橄榄油和发酵食品等复杂基质中的可重复性、保质期和性能方面仍然存在挑战。缩小这些差距需要集成的解决方案,将可打印,稳定的纳米材料油墨与简单的墨盒样品调节,模块化识别层以及强大的机载校准和数据处理例程结合起来。为了实现实际部署,我们提出了一种开发途径,重点是纳米材料油墨和电极的可扩展制造和质量控制,针对色谱参考方法的协调验证,持久的防污和自清洁策略,以及一种生态系统方法,该方法使用智能手机连接和云分析将电化学信号转换为可追溯的,可辩护的决策,供行业,监管机构和消费者使用。
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引用次数: 0
Proteomics method for identifying POT1-associated complexes at telomeres using ChIP-Mass spectrometry 使用chip -质谱技术鉴定端粒中pot1相关复合物的蛋白质组学方法。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-21 DOI: 10.1016/j.ymeth.2026.01.007
Nikita Harish Zade , Meghna Jain , Manoj Garg , Rahul Checker , Arkasubhra Ghosh , Ekta Khattar
POT1 is the only single stranded telomere binding protein in the shelterin complex. Together with TPP1, POT1 plays a crucial role in regulating telomere length and protecting telomeres from DNA damage repair proteins. The activation of DNA damage repair proteins at telomeres can be detrimental to cells, so their activity must be suppressed. POT1 interacts with other telomeric proteins (TRF2, TRF1, TIN2 and RAP1) via its association with TPP1. These proteins function together to protect and maintain the telomeres. Despite extensive knowledge of POT1′s role within the shelterin complex, the full spectrum of its interactors at the single-stranded telomeric overhang remains poorly defined. To study these interactions, we generated an endogenous Flag-tag knock-in of POT1 using the CRISPR-Cas9 gene editing system. To address the risk of unintended gene disruption associated with this technique, we conducted an in-depth characterization of the endogenously Flag-tagged POT1 clone to ensure that its telomere and TPP1 binding functions remained intact. Further, we performed proteomic profiling of the Flag-tagged POT1 within the chromatin fraction using ChIP-MS to explore its proteome. Our analysis uncovered a novel set of POT1-associated proteins at the extremes of telomeres. Given that POT1 exclusively binds to the single-stranded 3′ overhang of telomeres, the proteomic data obtained indicates POT1 interactions occurring at the extreme ends of telomeres. In conclusion, our study reveals previously uncharacterized POT1 associated proteins using ChIP mass spectrometric approach, paving the way for further investigations into telomere biology and potential therapies targeting telomere regulation.
POT1是庇护蛋白复合体中唯一的单链端粒结合蛋白。与TPP1一起,POT1在调节端粒长度和保护端粒免受DNA损伤修复蛋白的影响方面起着至关重要的作用。端粒DNA损伤修复蛋白的激活可能对细胞有害,因此必须抑制它们的活性。POT1通过与TPP1的关联与其他端粒蛋白(TRF2、TRF1、TIN2和RAP1)相互作用。这些蛋白质共同起保护和维持端粒的作用。尽管对POT1在庇护蛋白复合体中的作用有了广泛的了解,但其在单链端粒悬空处的相互作用物的全谱仍然不清楚。为了研究这些相互作用,我们使用CRISPR-Cas9基因编辑系统生成了POT1的内源性flag标签敲入。为了解决与该技术相关的意外基因破坏风险,我们对内源性flag标记的POT1克隆进行了深入的表征,以确保其端粒和TPP1结合功能保持完整。此外,我们使用ChIP-MS对染色质部分中的flag标记的POT1进行了蛋白质组学分析,以探索其蛋白质组。我们的分析在端粒的两端发现了一组新的与pot1相关的蛋白质。鉴于POT1只与端粒的单链3'悬空结合,获得的蛋白质组学数据表明,POT1相互作用发生在端粒的极端末端。总之,我们的研究利用ChIP质谱方法揭示了以前未表征的POT1相关蛋白,为进一步研究端粒生物学和针对端粒调控的潜在治疗铺平了道路。
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引用次数: 0
The clinical potential and limitations of metal-organic frameworks (MOFs) in dentistry 金属-有机框架(MOFs)在牙科中的临床潜力和局限性。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-10 DOI: 10.1016/j.ymeth.2026.01.006
Wael Sheet Hussein , Ali Fawzi Al-Hussainy , Soumya V. Menon , Laxmidhar Maharana , A. Sabarivani , Gunjan Mukherjee , Aashna Sinha , Khabilov Nigman , Hayder Naji Sameer , Rasim M. Salih , Mohaned Adil , Saman Kalantari
Nanoparticles (NPs) are intentionally incorporated into dental products to enhance material quality. Recently, metal–organic framework (MOF) NPs have attracted significant attention owing to their unique characteristics absent in their larger-scale counterparts. These properties make MOFs suitable for various functional platforms. MOF-based nanomaterials exhibit high antibacterial potential, owing to their biocompatibility, biodegradability, and safety for living organisms. They have also become a prominent component in the development of anticancer agents and in the manufacture of commercial medical products. Consequently, MOFs are becoming increasingly important in dentistry. They show promising therapeutic potential for inhibiting oral infectious diseases, such as those caused by bacterial plaque, and have a broad range of other biomedical applications, including the diagnosis and treatment of dental diseases. However, significant challenges hinder their transition from laboratory testing to widespread clinical use in hospitals. Key issues include long-term toxicity and biocompatibility concerns, unpredictable pharmacokinetics that can lead to unintended accumulation in organs like the liver and spleen, and the potential for adverse immune reactions. Other major obstacles are particle aggregation in biological fluids, the complex formation of a “protein corona” that can alter the NPs’ intended function, and the high cost of large-scale production under consistent Good Manufacturing Practices (GMP). This article discusses MOFs and their potential applications in identifying cancer biomarkers and treating tooth infections and oral cancers. It highlights their unique porous features, which help combat oral biofilms and detect microorganisms. The summary also addresses the primary clinical challenges that must be addressed to ensure the safe development of MOF-based therapies.
纳米颗粒(NPs)被有意地加入到牙科产品中,以提高材料质量。近年来,金属-有机框架(MOF)纳米粒子因其在大规模纳米粒子中所缺乏的独特特性而受到广泛关注。这些特性使得mof适用于各种功能平台。基于mof的纳米材料由于其生物相容性、生物可降解性和对生物体的安全性而具有很高的抗菌潜力。它们也成为开发抗癌剂和生产商业医疗产品的重要组成部分。因此,mof在牙科中变得越来越重要。它们在抑制口腔传染病(如由细菌菌斑引起的口腔传染病)方面显示出良好的治疗潜力,并具有广泛的其他生物医学应用,包括牙科疾病的诊断和治疗。然而,重大挑战阻碍了它们从实验室测试向医院广泛临床使用的过渡。关键问题包括长期毒性和生物相容性问题,不可预测的药代动力学可能导致肝脏和脾脏等器官的意外积聚,以及潜在的不良免疫反应。其他主要障碍是生物流体中的颗粒聚集,“蛋白质冠”的复杂形成可以改变NPs的预期功能,以及在一致的良好生产规范(GMP)下大规模生产的高成本。本文讨论了mof及其在识别癌症生物标志物、治疗牙齿感染和口腔癌方面的潜在应用。它突出了它们独特的多孔特性,有助于对抗口腔生物膜和检测微生物。摘要还讨论了为确保mof疗法的安全开发必须解决的主要临床挑战。
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引用次数: 0
Navigating the frontier of human microglia isolation—standardization and translational insight 导航人类小胶质细胞分离的前沿-标准化和翻译见解
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-08 DOI: 10.1016/j.ymeth.2026.01.002
Pankaj Pal , Monika Sharma , Sukesh Kumar Gupta
The expanding field of neuroscience has increasingly recognized the critical role of microglia, the resident immune cells of the central nervous system (CNS), in human health and disease. This review embarks on an in-depth exploration of the current landscape of human microglia extraction techniques. With a focus on the unique challenges and opportunities presented by human tissue samples, we delve into various sources of human microglia, including primary brain tissue and stem cell-derived models, addressing the ethical and logistical considerations inherent to these methodologies. Laboratory techniques for microglia extraction are scrutinized, highlighting adaptations for human samples in enzymatic digestion, mechanical dissociation, density gradient centrifugation, and cell sorting, alongside innovations in cryopreservation and viability assessment. Critical perspectives are offered on technical hurdles, technique selection for human research, and the horizon of emerging technologies. Standardization efforts and international guidelines are discussed, underscoring their significance in fostering reproducibility and comparability across studies. The review also illuminates applications of human microglia in disease modeling, drug discovery, and understanding neurodevelopmental and neurodegenerative processes. Concluding remarks emphasize future directions of human microglia research, advocating for methodological precision and integration of next-generation technologies to unlock new therapeutic avenues. This review serves as a comprehensive guide for researchers navigating the complex terrain of human microglia extraction, aiming to catalyze advancements in neuroscience research through methodological innovation and standardization.
随着神经科学领域的不断扩大,人们越来越认识到小胶质细胞(中枢神经系统的常驻免疫细胞)在人类健康和疾病中的关键作用。本文对人类小胶质细胞提取技术的现状进行了深入的探讨。重点关注人类组织样本所带来的独特挑战和机遇,我们深入研究了人类小胶质细胞的各种来源,包括初级脑组织和干细胞衍生模型,解决了这些方法固有的伦理和后勤考虑。对小胶质细胞提取的实验室技术进行了仔细审查,强调了人类样品在酶消化、机械解离、密度梯度离心和细胞分选方面的适应性,以及在冷冻保存和活力评估方面的创新。对技术障碍、人类研究的技术选择和新兴技术的前景提出了批判性的观点。讨论了标准化工作和国际准则,强调了它们在促进研究的可重复性和可比性方面的重要性。综述还阐明了人类小胶质细胞在疾病建模、药物发现和理解神经发育和神经退行性过程中的应用。结束语强调了人类小胶质细胞研究的未来方向,提倡方法的精确性和下一代技术的整合,以开辟新的治疗途径。这篇综述为研究人员导航人类小胶质细胞提取的复杂地形提供了全面的指南,旨在通过方法创新和标准化促进神经科学研究的进步。
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引用次数: 0
Viral-mediated fluorescent labelling of activated hippocampal memory engrams to study epigenetic dynamics associated with gene expression 病毒介导的激活海马记忆印记荧光标记研究与基因表达相关的表观遗传动力学。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-08 DOI: 10.1016/j.ymeth.2026.01.004
Víctor Pola-Véliz , Sebastián B. Arredondo , Yennyfer Arancibia , Juan Ahumada , Sebastián Estay , Nicole Vidal , Paola A. Haeger , Marco Fuenzalida , Lorena Varela-Nallar , Fernando J. Bustos , Martin Montecino , Brigitte van Zundert
Memory formation activates a relatively sparse population of engram cells that store long-term memories. Changes in the epigenetic landscape and 3D chromatin architecture have been proposed as key candidate regulators of transcriptional waves that control gene expression in engram cells; however, isolating chromatin efficiently from engram cells has remained challenging. Double-transgenic Targeted Recombination in Active Populations (dTRAP) mice have enabled indelible EYFP labeling of hippocampal engram cells expressing the immediate-early gene (IEG) Arc when ArcCreERT2 mice are crossed with R26R-STOP-floxed-EYFP mice and exposed to learning paradigms. A major limitation of dTRAP mice is that labeling of activated hippocampal Arc+ neurons with soluble EYFP compromises the efficiency of fluorescence-activated nuclear sorting (FANS) of engram nuclei, and hence isolation of chromatin. Here, we used viral-mediated delivery of GFP-KASH (AAV-PHP.eB-FLEX-EGFP-KASH) to ArcCreERT2 mice -generating vkTRAP mice- to enable precise and robust endogenous perinuclear fluorescent tagging of activated hippocampal neurons following contextual fear conditioning (CFC). At 24 h post-CFC (24 h-CFC), vkTRAP mice exhibited a robust freezing behavior. Electrophysiological recordings in CA1 hippocampal slices showed occluded long-term potentiation (LTP). Efficient FANS-based isolation of hippocampal engram nuclei enabled chromatin immunoprecipitation (ChIP) assays (detecting H3K4me3, H3K9ac and H3K27ac) at promoters of immediate-early (Egr1) and plasticity-related (Dlg4/PSD95) genes. Expression peaks of both Egr1 and Dlg4/PSD95 transcripts during memory acquisition (1 h-CFC) and consolidation (24 h-CFC) were accompanied by active epigenetic histone mark profiles. We conclude that vkTRAP provides a robust model to study epigenomic regulation in engram cells.
记忆形成激活了相对稀少的印迹细胞,这些细胞储存了长期记忆。表观遗传景观和三维染色质结构的变化被认为是印迹细胞中控制基因表达的转录波的关键候选调节因子;然而,从印迹细胞中有效地分离染色质仍然具有挑战性。当ArcCreERT2小鼠与R26R- stop - floxedypfp小鼠杂交并暴露在学习范式中时,双转基因活性群体靶向重组(dTRAP)小鼠能够使表达立即早期基因(IEG) Arc的海马印迹细胞不可磨灭地标记EYFP。dTRAP小鼠的一个主要限制是,用可溶性EYFP标记激活的海马Arc+神经元会影响印迹核的荧光激活核分选(FANS)的效率,从而影响染色质的分离。在这里,我们使用病毒介导的GFP-KASH (AAV-PHP.eB-FLEX-EGFP-KASH)传递到ArcCreERT2小鼠-生成vkTRAP小鼠-以实现上下文恐惧条件反射(CFC)后激活的海马神经元的精确和强大的内源性核周荧光标记。在24 h(24 h- cfc)后,vkTRAP小鼠表现出强健的冻结行为。CA1海马切片电生理记录显示长时程增强(LTP)闭塞。海马印迹核的高效分离使染色质免疫沉淀(ChIP)测定(检测H3K4me3, H3K9ac和H3K27ac)在立即早期(Egr1)和可塑性相关(Dlg4/PSD95)基因启动子上。Egr1和Dlg4/PSD95转录本在记忆获取(1 h-CFC)和巩固(24 h-CFC)期间的表达高峰均伴有活跃的表观遗传组蛋白标记谱。我们得出结论,vkTRAP提供了一个强大的模型来研究印迹细胞的表观基因组调控。
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