Complex genetic landscape revealed by a population in the eastern Tianshan Mountains of Xinjiang between the 8th and 11th centuries CE

The eastern Tianshan Mountain (ETS) region in Xinjiang, China, has played a crucial role as a major highway for large‐scale human migrations and technological exchanges across Eurasia throughout history. Understanding the genetic makeup of past populations holds significant importance in comprehending human mobility in this region. Here, we report genome‐wide ancient DNA for the two individuals whose origins remain uncertain, found at the Dahe ancient city site in the ETS region. Our results indicate that although both individuals display a higher genetic affinity to Asian populations, one individual shows some genetic sharing with South Asians, while the other shares more affinity with populations from Northeastern Asia. Radiocarbon dating shows that the two human remains were not deposited simultaneously. Overall, the combined genetic, physical anthropology and radiocarbon evidence strongly suggests that the ETS region, situated at the heart of the Silk Road, has been a crossroads of diverse populations coexisting between the 8th and 11th centuries. Additionally, the genetic ancestry sharing with the Bronze Age Tarim mummies suggested a long‐term residual of indigenous ancestry in Xinjiang and showed that autochthonous deep Asian ancestry had left their genetic legacy into the historical populations of Xinjiang despite a spanning of over three millennia.