通过 CAAT 盒和 SCOT 标记分析评估绿豆(Vigna radiata)的耐盐性和遗传变异

Q3 Agricultural and Biological Sciences Ecological Genetics and Genomics Pub Date : 2024-05-20 DOI:10.1016/j.egg.2024.100266
Elangovan Dilipan , A. Jawahar Nisha
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引用次数: 0

摘要

禾本科木属植物有大约 100 个野生品种,分布在热带和亚热带地区。泰米尔纳德邦广泛种植三个品种的禾谷类作物(Vigna radiata L.)(VBN3、VBN6 & CO8)。土壤盐分是粮食生产中的一个重要问题,因为土壤中过高的盐浓度会抑制植物生长,延迟成熟,降低作物产量或导致作物枯萎。在本研究中,我们对青蒜的耐盐性进行了有效筛选,利用分子标记对不同浓度 NaCl(对照、50、100、150 和 200 mM)下青蒜的盐胁迫进行了生理、生化和遗传变异机制的研究。结果表明,盐胁迫显著降低了青蒜的生理、生化和植物生长特性。此外,还利用起始密码子定向标记(SCoT)和 CAAT 盒衍生多态性标记(CBDP)等基因定向标记来研究青蒜在盐胁迫下的遗传变异。其中,SCoT 和 CBDP 引物分别产生了 54 条和 90 条多态性条带,平均每条引物分别产生 5.7 条和 7.8 条条带。分子变异分析(AMOVA)和主坐标分析(PCoA)显示,物种内的遗传多样性大于物种间的遗传多样性,这表明三个品种的盐水处理样本都显示出遗传变异。本研究的结论是,NaCl 浓度的增加会降低植物的生长,并显著影响生理、生化和遗传变异。
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Assessing salinity tolerance and genetic variation in mung bean (Vigna radiata) through CAAT box and SCoT marker analysis

Vigna is a genus of approximately 100 wild species found in tropical and sub-tropical region. The three varieties of green gram (Vigna radiata L.) (VBN3, VBN6 & CO8) was widely cultivated in Tamil Nadu. Soil salinity is a significant issue in food production because excessive salt concentrations in soil inhibit plant development, delaying maturity and reducing crop yield or causing wilting. In the present study, we investigate the effective screening of saline tolerance in green gram, carried out the mechanism of physiological, biochemical and genetic variation using molecular markers of salinity stress of green gram under different concentration of NaCl (control, 50, 100, 150 and 200 mM). The result shows that, the salinity stress significantly reduced the physiological, biochemical and plant growth characteristics. Besides, the gene-targeted like Start Codon Targeted (SCoT) and CAAT box derived polymorphism (CBDP) markers were used to examine the genetic variability under saline stress of green gram. Herein, the SCoT and CBDP primers produced 54 and 90 polymorphic bands with an average of 5.7 and 7.8 bands per primer, respectively. The Analysis of Molecular Variance (AMOVA) and Principal Coordinate Analysis (PCoA) revealed genetic diversity within species was greater than between them, indicating that all of the saline-treated samples from the three varieties displayed genetic variation. The present study concludes that the increased concentration of NaCl reduced the plant growth and significantly affects the physiological, biochemical and genetic variation.

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来源期刊
Ecological Genetics and Genomics
Ecological Genetics and Genomics Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
1.80
自引率
0.00%
发文量
44
期刊介绍: Ecological Genetics and Genomics publishes ecological studies of broad interest that provide significant insight into ecological interactions or/ and species diversification. New data in these areas are published as research papers, or methods and resource reports that provide novel information on technologies or tools that will be of interest to a broad readership. Complete data sets are shared where appropriate. The journal also provides Reviews, and Perspectives articles, which present commentary on the latest advances published both here and elsewhere, placing such progress in its broader biological context. Topics include: -metagenomics -population genetics/genomics -evolutionary ecology -conservation and molecular adaptation -speciation genetics -environmental and marine genomics -ecological simulation -genomic divergence of organisms
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