Chioma B. Ubah, Martilda U. Akem, Innocent Benjamin, Henry O. Edet, Adedapo S. Adeyinka and Hitler Louis
{"title":"亚硝酸铝纳米管的异质原子化学定制作为 5-羟基吲哚乙酸(类癌的生物标记物)的生物传感器:计算研究的启示","authors":"Chioma B. Ubah, Martilda U. Akem, Innocent Benjamin, Henry O. Edet, Adedapo S. Adeyinka and Hitler Louis","doi":"10.1039/D4ME00019F","DOIUrl":null,"url":null,"abstract":"<p >This study aims to elucidate the properties of aluminum nitrite nanotubes (AlNNT) encapsulated with phosphorus (P@AlNNT), sulphur (S@AlNNT), and silicon (Si@AlNNT) heteroatoms for use as biosensors for 5-hydroxyindoleacetic acid (5HIAA). It was considered an indicative biomarker for carcinoid tumors and investigated using the density functional theory (DFT) at the ωB97XD/def2svp level of theory. With adsorption energies of −0.009 eV, 0.055 eV, and 0.044 eV for 5HIAA_P@AINNT, 5HIAA_S@AINNT, and 5HIAA_Si@AINNT, respectively, the 5HIAA_P@AINNT was the only favorable system for adsorption of 5HIAA. According to the topological investigation, the hydrogen bond strength was in the order of 5HIAA_Si@AlNNT > 5HIAA_S@AlNNT > 5HIAA_P@AlNNT. This was also confirmed by NCI-RDG analysis. Regarding sensory parameters, as per the fraction of electron transfer, 5HIAA_S@AlNNT had the highest propensity to react with the sensor followed by 5HIAA_Si@AlNNT. The order of recovery time (<em>τ</em>) was recorded to be 5HIAA_P@AlNNT < 5HIAA_S@AlNNT < 5HIAA_Si@AlNNT. It was recorded that the systems 5HIAA_S@AlNNT and 5HIAA_Si@AlNNT had longer recovery times at 310 K when compared to their recovery times at 298 K. However, the system 5HIAA_P@AlNNT records a minute shorter recovery time at 298 K compared to its recovery time at 310 K. Results from molecular dynamic simulation reveal that 5HIAA_S@AlNNT and 5HIAA_Si@AlNNT are more thermally stable, which is necessary for reliable and accurate detection. System 5HIAA_P@AlNNT records the most favourable adsorption property and considerable sensing characteristics.</p>","PeriodicalId":91,"journal":{"name":"Molecular Systems Design & Engineering","volume":" 8","pages":" 832-846"},"PeriodicalIF":3.2000,"publicationDate":"2024-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Heteroatoms chemical tailoring of aluminum nitrite nanotubes as biosensors for 5-hydroxyindole acetic acid (a biomarker for carcinoid tumors): insights from a computational study†\",\"authors\":\"Chioma B. Ubah, Martilda U. Akem, Innocent Benjamin, Henry O. Edet, Adedapo S. Adeyinka and Hitler Louis\",\"doi\":\"10.1039/D4ME00019F\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >This study aims to elucidate the properties of aluminum nitrite nanotubes (AlNNT) encapsulated with phosphorus (P@AlNNT), sulphur (S@AlNNT), and silicon (Si@AlNNT) heteroatoms for use as biosensors for 5-hydroxyindoleacetic acid (5HIAA). It was considered an indicative biomarker for carcinoid tumors and investigated using the density functional theory (DFT) at the ωB97XD/def2svp level of theory. With adsorption energies of −0.009 eV, 0.055 eV, and 0.044 eV for 5HIAA_P@AINNT, 5HIAA_S@AINNT, and 5HIAA_Si@AINNT, respectively, the 5HIAA_P@AINNT was the only favorable system for adsorption of 5HIAA. According to the topological investigation, the hydrogen bond strength was in the order of 5HIAA_Si@AlNNT > 5HIAA_S@AlNNT > 5HIAA_P@AlNNT. This was also confirmed by NCI-RDG analysis. Regarding sensory parameters, as per the fraction of electron transfer, 5HIAA_S@AlNNT had the highest propensity to react with the sensor followed by 5HIAA_Si@AlNNT. The order of recovery time (<em>τ</em>) was recorded to be 5HIAA_P@AlNNT < 5HIAA_S@AlNNT < 5HIAA_Si@AlNNT. It was recorded that the systems 5HIAA_S@AlNNT and 5HIAA_Si@AlNNT had longer recovery times at 310 K when compared to their recovery times at 298 K. However, the system 5HIAA_P@AlNNT records a minute shorter recovery time at 298 K compared to its recovery time at 310 K. Results from molecular dynamic simulation reveal that 5HIAA_S@AlNNT and 5HIAA_Si@AlNNT are more thermally stable, which is necessary for reliable and accurate detection. System 5HIAA_P@AlNNT records the most favourable adsorption property and considerable sensing characteristics.</p>\",\"PeriodicalId\":91,\"journal\":{\"name\":\"Molecular Systems Design & Engineering\",\"volume\":\" 8\",\"pages\":\" 832-846\"},\"PeriodicalIF\":3.2000,\"publicationDate\":\"2024-05-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Molecular Systems Design & Engineering\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://pubs.rsc.org/en/content/articlelanding/2024/me/d4me00019f\",\"RegionNum\":3,\"RegionCategory\":\"工程技术\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Molecular Systems Design & Engineering","FirstCategoryId":"5","ListUrlMain":"https://pubs.rsc.org/en/content/articlelanding/2024/me/d4me00019f","RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Heteroatoms chemical tailoring of aluminum nitrite nanotubes as biosensors for 5-hydroxyindole acetic acid (a biomarker for carcinoid tumors): insights from a computational study†
This study aims to elucidate the properties of aluminum nitrite nanotubes (AlNNT) encapsulated with phosphorus (P@AlNNT), sulphur (S@AlNNT), and silicon (Si@AlNNT) heteroatoms for use as biosensors for 5-hydroxyindoleacetic acid (5HIAA). It was considered an indicative biomarker for carcinoid tumors and investigated using the density functional theory (DFT) at the ωB97XD/def2svp level of theory. With adsorption energies of −0.009 eV, 0.055 eV, and 0.044 eV for 5HIAA_P@AINNT, 5HIAA_S@AINNT, and 5HIAA_Si@AINNT, respectively, the 5HIAA_P@AINNT was the only favorable system for adsorption of 5HIAA. According to the topological investigation, the hydrogen bond strength was in the order of 5HIAA_Si@AlNNT > 5HIAA_S@AlNNT > 5HIAA_P@AlNNT. This was also confirmed by NCI-RDG analysis. Regarding sensory parameters, as per the fraction of electron transfer, 5HIAA_S@AlNNT had the highest propensity to react with the sensor followed by 5HIAA_Si@AlNNT. The order of recovery time (τ) was recorded to be 5HIAA_P@AlNNT < 5HIAA_S@AlNNT < 5HIAA_Si@AlNNT. It was recorded that the systems 5HIAA_S@AlNNT and 5HIAA_Si@AlNNT had longer recovery times at 310 K when compared to their recovery times at 298 K. However, the system 5HIAA_P@AlNNT records a minute shorter recovery time at 298 K compared to its recovery time at 310 K. Results from molecular dynamic simulation reveal that 5HIAA_S@AlNNT and 5HIAA_Si@AlNNT are more thermally stable, which is necessary for reliable and accurate detection. System 5HIAA_P@AlNNT records the most favourable adsorption property and considerable sensing characteristics.
期刊介绍:
Molecular Systems Design & Engineering provides a hub for cutting-edge research into how understanding of molecular properties, behaviour and interactions can be used to design and assemble better materials, systems, and processes to achieve specific functions. These may have applications of technological significance and help address global challenges.