胰岛素信号传导反应网络的比较

Patrick Vincent N. Lubenia, Eduardo R. Mendoza, Angelyn R. Lao
{"title":"胰岛素信号传导反应网络的比较","authors":"Patrick Vincent N. Lubenia, Eduardo R. Mendoza, Angelyn R. Lao","doi":"arxiv-2405.10486","DOIUrl":null,"url":null,"abstract":"Understanding the insulin signaling cascade provides insights on the\nunderlying mechanisms of biological phenomena such as insulin resistance,\ndiabetes, Alzheimer's disease, and cancer. For this reason, previous studies\nutilized chemical reaction network theory to perform comparative analyses of\nreaction networks of insulin signaling in healthy (INSMS: INSulin Metabolic\nSignaling) and diabetic cells (INRES: INsulin RESistance). This study extends\nthese analyses using various methods which give further insights regarding\ninsulin signaling. Using embedded networks, we discuss evidence of the presence\nof a structural \"bifurcation\" in the signaling process between INSMS and INRES.\nConcordance profiles of INSMS and INRES show that both have a high propensity\nto remain monostationary. Moreover, the concordance properties allow us to\npresent heuristic evidence that INRES has a higher level of stability beyond\nits monostationarity. Finally, we discuss a new way of analyzing reaction\nnetworks through network translation. This method gives rise to three new\ninsights: (i) each stoichiometric class of INSMS and INRES contains a unique\npositive equilibrium; (ii) any positive equilibrium of INSMS is exponentially\nstable and is a global attractor in its stoichiometric class; and (iii) any\npositive equilibrium of INRES is locally asymptotically stable. These results\nopen up opportunities for collaboration with experimental biologists to\nunderstand insulin signaling better.","PeriodicalId":501325,"journal":{"name":"arXiv - QuanBio - Molecular Networks","volume":"76 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Comparison of reaction networks of insulin signaling\",\"authors\":\"Patrick Vincent N. Lubenia, Eduardo R. Mendoza, Angelyn R. Lao\",\"doi\":\"arxiv-2405.10486\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Understanding the insulin signaling cascade provides insights on the\\nunderlying mechanisms of biological phenomena such as insulin resistance,\\ndiabetes, Alzheimer's disease, and cancer. For this reason, previous studies\\nutilized chemical reaction network theory to perform comparative analyses of\\nreaction networks of insulin signaling in healthy (INSMS: INSulin Metabolic\\nSignaling) and diabetic cells (INRES: INsulin RESistance). This study extends\\nthese analyses using various methods which give further insights regarding\\ninsulin signaling. Using embedded networks, we discuss evidence of the presence\\nof a structural \\\"bifurcation\\\" in the signaling process between INSMS and INRES.\\nConcordance profiles of INSMS and INRES show that both have a high propensity\\nto remain monostationary. Moreover, the concordance properties allow us to\\npresent heuristic evidence that INRES has a higher level of stability beyond\\nits monostationarity. Finally, we discuss a new way of analyzing reaction\\nnetworks through network translation. This method gives rise to three new\\ninsights: (i) each stoichiometric class of INSMS and INRES contains a unique\\npositive equilibrium; (ii) any positive equilibrium of INSMS is exponentially\\nstable and is a global attractor in its stoichiometric class; and (iii) any\\npositive equilibrium of INRES is locally asymptotically stable. These results\\nopen up opportunities for collaboration with experimental biologists to\\nunderstand insulin signaling better.\",\"PeriodicalId\":501325,\"journal\":{\"name\":\"arXiv - QuanBio - Molecular Networks\",\"volume\":\"76 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-05-17\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Molecular Networks\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2405.10486\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Molecular Networks","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2405.10486","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

了解胰岛素信号级联有助于深入了解胰岛素抵抗、糖尿病、阿尔茨海默病和癌症等生物现象的基本机制。因此,之前的研究利用化学反应网络理论对健康细胞(INSMS:INSulin MetabolicSignaling)和糖尿病细胞(INRES:INsulin RESistance)中的胰岛素信号转导反应网络进行了比较分析。本研究使用各种方法扩展了这些分析,进一步揭示了胰岛素信号传导。通过使用嵌入式网络,我们讨论了 INSMS 和 INRES 信号转导过程中存在结构性 "分叉 "的证据。INSMS 和 INRES 的一致性曲线表明,二者都有很高的保持单稳态的倾向。此外,一致性特性使我们能够提出启发式证据,证明 INRES 在单稳态之外还有更高水平的稳定性。最后,我们讨论了一种通过网络翻译分析反应网络的新方法。这种方法产生了三个新观点:(i) INSMS 和 INRES 的每个计量类都包含一个唯一的正平衡;(ii) INSMS 的任何正平衡都是指数稳定的,并且是其计量类中的全局吸引子;(iii) INRES 的任何正平衡都是局部渐近稳定的。这些结果为更好地理解胰岛素信号提供了与实验生物学家合作的机会。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Comparison of reaction networks of insulin signaling
Understanding the insulin signaling cascade provides insights on the underlying mechanisms of biological phenomena such as insulin resistance, diabetes, Alzheimer's disease, and cancer. For this reason, previous studies utilized chemical reaction network theory to perform comparative analyses of reaction networks of insulin signaling in healthy (INSMS: INSulin Metabolic Signaling) and diabetic cells (INRES: INsulin RESistance). This study extends these analyses using various methods which give further insights regarding insulin signaling. Using embedded networks, we discuss evidence of the presence of a structural "bifurcation" in the signaling process between INSMS and INRES. Concordance profiles of INSMS and INRES show that both have a high propensity to remain monostationary. Moreover, the concordance properties allow us to present heuristic evidence that INRES has a higher level of stability beyond its monostationarity. Finally, we discuss a new way of analyzing reaction networks through network translation. This method gives rise to three new insights: (i) each stoichiometric class of INSMS and INRES contains a unique positive equilibrium; (ii) any positive equilibrium of INSMS is exponentially stable and is a global attractor in its stoichiometric class; and (iii) any positive equilibrium of INRES is locally asymptotically stable. These results open up opportunities for collaboration with experimental biologists to understand insulin signaling better.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Multi-variable control to mitigate loads in CRISPRa networks Some bounds on positive equilibria in mass action networks Non-explosivity of endotactic stochastic reaction systems Limits on the computational expressivity of non-equilibrium biophysical processes When lowering temperature, the in vivo circadian clock in cyanobacteria follows and surpasses the in vitro protein clock trough the Hopf bifurcation
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1