学习水体系中的电子极化。

IF 5.6 2区 化学 Q1 CHEMISTRY, MEDICINAL Journal of Chemical Information and Modeling Pub Date : 2024-05-28 DOI:10.1021/acs.jcim.4c00421
Arnab Jana, Sam Shepherd, Yair Litman and David M. Wilkins*, 
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引用次数: 0

摘要

周期性重复系统的极化是原子位置的不连续函数,这一事实起初似乎阻碍了对其进行统计学习的尝试。本文比较了两种建立体极化模型的方法:一种方法是使用简单的点电荷模型预处理原始极化,以获得原子位置平滑函数的学习目标,并将总极化学习为原子中心偶极子的总和;另一种方法是预测原子周围万尼尔中心的平均位置。对于一系列块状水性体系,这两种方法的性能都相对较好,前者略胜一筹,但往往需要额外的努力才能找到合适的点电荷模型。作为一项具有挑战性的测试,我们还分析了模型在空气-水界面上的性能。在这种情况下,虽然万尼尔中心方法无需进一步修改就能提供准确的预测,但预处理方法需要利用来自孤立水分子的信息进行增强,才能达到类似的准确性。最后,我们提出了一个简单的方案,以数据驱动的方式,利用在低得多的理论水平上计算出的少量导数对极化进行预处理,从而在不显著增加计算成本的情况下克服了寻找点电荷模型的需要。我们相信,这里介绍的训练策略有助于构建精确的极化模型,而这正是研究现实复杂块体系统和界面的介电性能所需的自始精确度。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Learning Electronic Polarizations in Aqueous Systems

The polarization of periodically repeating systems is a discontinuous function of the atomic positions, a fact which seems at first to stymie attempts at their statistical learning. Two approaches to build models for bulk polarizations are compared: one in which a simple point charge model is used to preprocess the raw polarization to give a learning target that is a smooth function of atomic positions and the total polarization is learned as a sum of atom-centered dipoles and one in which instead the average position of Wannier centers around atoms is predicted. For a range of bulk aqueous systems, both of these methods perform perform comparatively well, with the former being slightly better but often requiring an extra effort to find a suitable point charge model. As a challenging test, we also analyze the performance of the models at the air–water interface. In this case, while the Wannier center approach delivers accurate predictions without further modifications, the preprocessing method requires augmentation with information from isolated water molecules to reach similar accuracy. Finally, we present a simple protocol to preprocess the polarizations in a data-driven way using a small number of derivatives calculated at a much lower level of theory, thus overcoming the need to find point charge models without appreciably increasing the computation cost. We believe that the training strategies presented here help the construction of accurate polarization models required for the study of the dielectric properties of realistic complex bulk systems and interfaces with ab initio accuracy.

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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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