基于线粒体质量控制的代谢组学和转录组学洞察丹参关键酶基因的进化

Zhenyu Zhao , Huijie Li , Boyao Wang , Xuhao Gong , Jinhua Gu
{"title":"基于线粒体质量控制的代谢组学和转录组学洞察丹参关键酶基因的进化","authors":"Zhenyu Zhao ,&nbsp;Huijie Li ,&nbsp;Boyao Wang ,&nbsp;Xuhao Gong ,&nbsp;Jinhua Gu","doi":"10.1016/j.jhip.2024.04.004","DOIUrl":null,"url":null,"abstract":"<div><p>The purpose of this study was to explore the relationship between the evolution of key <em>Salvia</em> enzyme genes and metabolite biological activity on mitochondrial quality control. Metabolomics and transcriptomics were performed to detect the metabolites of <em>Salvia</em> and <em>76AH1</em> (CYP450) genes and a maximum likelihood tree for <em>Salvia</em> was established. Additionally, the protein properties of 76AH were analyzed and the metabolite, as well as mitochondrial quality control, targets were downloaded from the TCMSP, BATMAN, and GeneCards databases and analyzed. Molecular docking of PINK1 with cryptotanshinone and tanshinone IIA was assessed and a molecular binding area was identified. Moreover, the specific types of <em>Salvia</em> secondary metabolites were accurately identified and quantified with nearly all AH1 genes having been sequenced. This study begins to elucidate the relationship between species evolution and biological activity. Specifically, the structural analysis demonstrates that cryptotanshinone and tanshinone IIA exhibit strong pharmacological activity in mitochondrial quality control.</p></div>","PeriodicalId":100787,"journal":{"name":"Journal of Holistic Integrative Pharmacy","volume":"5 2","pages":"Pages 63-76"},"PeriodicalIF":0.0000,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2707368824000190/pdfft?md5=941f77026b92e83fdd60a9f1ebe9230a&pid=1-s2.0-S2707368824000190-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Evolution of Salvia key enzyme genes based on metabolomic and transcriptomic insights into mitochondrial quality control\",\"authors\":\"Zhenyu Zhao ,&nbsp;Huijie Li ,&nbsp;Boyao Wang ,&nbsp;Xuhao Gong ,&nbsp;Jinhua Gu\",\"doi\":\"10.1016/j.jhip.2024.04.004\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The purpose of this study was to explore the relationship between the evolution of key <em>Salvia</em> enzyme genes and metabolite biological activity on mitochondrial quality control. Metabolomics and transcriptomics were performed to detect the metabolites of <em>Salvia</em> and <em>76AH1</em> (CYP450) genes and a maximum likelihood tree for <em>Salvia</em> was established. Additionally, the protein properties of 76AH were analyzed and the metabolite, as well as mitochondrial quality control, targets were downloaded from the TCMSP, BATMAN, and GeneCards databases and analyzed. Molecular docking of PINK1 with cryptotanshinone and tanshinone IIA was assessed and a molecular binding area was identified. Moreover, the specific types of <em>Salvia</em> secondary metabolites were accurately identified and quantified with nearly all AH1 genes having been sequenced. This study begins to elucidate the relationship between species evolution and biological activity. Specifically, the structural analysis demonstrates that cryptotanshinone and tanshinone IIA exhibit strong pharmacological activity in mitochondrial quality control.</p></div>\",\"PeriodicalId\":100787,\"journal\":{\"name\":\"Journal of Holistic Integrative Pharmacy\",\"volume\":\"5 2\",\"pages\":\"Pages 63-76\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-05-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2707368824000190/pdfft?md5=941f77026b92e83fdd60a9f1ebe9230a&pid=1-s2.0-S2707368824000190-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Holistic Integrative Pharmacy\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2707368824000190\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Holistic Integrative Pharmacy","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2707368824000190","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

本研究旨在探索丹参关键酶基因的进化与线粒体质量控制代谢物生物活性之间的关系。通过代谢组学和转录组学检测了丹参的代谢物和 76AH1(CYP450)基因,并建立了丹参的最大似然树。此外,还分析了 76AH 的蛋白质特性,并从 TCMSP、BATMAN 和 GeneCards 数据库中下载并分析了代谢物以及线粒体质量控制的靶标。评估了 PINK1 与隐丹参酮和丹参酮 IIA 的分子对接,并确定了分子结合区。此外,通过对几乎所有 AH1 基因进行测序,准确鉴定和量化了丹参次生代谢物的具体类型。这项研究开始阐明物种进化与生物活性之间的关系。具体来说,结构分析表明隐丹参酮和丹参酮 IIA 在线粒体质量控制方面具有很强的药理活性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Evolution of Salvia key enzyme genes based on metabolomic and transcriptomic insights into mitochondrial quality control

The purpose of this study was to explore the relationship between the evolution of key Salvia enzyme genes and metabolite biological activity on mitochondrial quality control. Metabolomics and transcriptomics were performed to detect the metabolites of Salvia and 76AH1 (CYP450) genes and a maximum likelihood tree for Salvia was established. Additionally, the protein properties of 76AH were analyzed and the metabolite, as well as mitochondrial quality control, targets were downloaded from the TCMSP, BATMAN, and GeneCards databases and analyzed. Molecular docking of PINK1 with cryptotanshinone and tanshinone IIA was assessed and a molecular binding area was identified. Moreover, the specific types of Salvia secondary metabolites were accurately identified and quantified with nearly all AH1 genes having been sequenced. This study begins to elucidate the relationship between species evolution and biological activity. Specifically, the structural analysis demonstrates that cryptotanshinone and tanshinone IIA exhibit strong pharmacological activity in mitochondrial quality control.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Secondary metabolites from the cold-seep-derived fungus Penicillium sp. SCSIO 41425 and their free radical scavenging activity The versatility of apigenin: Especially as a chemopreventive agent for cancer Research progress in application of alginate gel as tumor drug delivery carrier, for tumor localization and 3D tumor cell model Exercise therapy: Anti-tumor and improving chemotherapy efficacy The research advance on the theory of Chinese medicine-exterior-interior correlation between the Lung and Large Intestine in the treatment of chronic cough
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1