GSEA分析发现冠状动脉微循环障碍的潜在药物靶点及其相互作用网络

IF 2.5 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS SLAS Technology Pub Date : 2024-08-01 DOI:10.1016/j.slast.2024.100152
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引用次数: 0

摘要

冠状动脉微循环功能障碍(CMD)是导致心血管疾病的主要原因之一。传统的治疗方法缺乏特异性,难以充分考虑患者病情的差异,实现有效的治疗和干预。CMD 的复杂性和多样性要求更规范的诊断和治疗方案,以明确最佳治疗策略和长期疗效。现有的治疗措施主要集中于症状管理,包括药物治疗、生活方式干预和心理治疗。然而,这些方法对所有患者的疗效并不一致,长期疗效也尚不明确。GSEA是一种用于解读基因表达数据的生物信息学方法,尤其适用于识别基因表达数据中预定义基因组的富集情况。为了实现个性化治疗,提高干预的质量和效果,本文结合GSEA(基因组富集分析)技术,对冠状动脉微循环功能障碍的潜在药物靶点及其相互作用网络进行了深入研究。本文首先利用Coremine医学数据库、GeneCards和DrugBank公共数据库收集基因数据。然后,使用过滤方法对数据进行预处理,并使用GSEA对预处理后的基因表达数据进行分析,以识别和计算与CMD相关的通路和富集得分。最后,通过计算自相关特征提取蛋白质序列特征。为了验证GSEA的有效性,本文从精确度、接收者操作特征曲线(ROC)、相关性和潜在药物靶点四个方面进行了实验分析,并与基因调控网络(GRN)和随机森林(RF)方法进行了比较。结果表明,与GRN和RF方法相比,GSEA的平均精确度提高了0.11。结论表明,GSEA有助于识别和探索潜在的药物靶点及其相互作用网络,为CMD的个性化质量提供了新思路。
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GSEA analysis identifies potential drug targets and their interaction networks in coronary microcirculation disorders

Coronary microcirculation dysfunction (CMD) is one of the main causes of cardiovascular disease. Traditional treatment methods lack specificity, making it difficult to fully consider the differences in patient conditions and achieve effective treatment and intervention. The complexity and diversity of CMD require more standardized diagnosis and treatment plans to clarify the best treatment strategy and long-term outcomes. The existing treatment measures mainly focus on symptom management, including medication treatment, lifestyle intervention, and psychological therapy. However, the efficacy of these methods is not consistent for all patients, and the long-term efficacy is not yet clear. GSEA is a bioinformatics method used to interpret gene expression data, particularly for identifying the enrichment of predefined gene sets in gene expression data. In order to achieve personalized treatment and improve the quality and effectiveness of interventions, this article combined GSEA (Gene Set Enrichment Analysis) technology to conduct in-depth research on potential drug targets and their interaction networks in coronary microcirculation dysfunctions. This article first utilized the Coremine medical database, GeneCards, and DrugBank public databases to collect gene data. Then, filtering methods were used to preprocess the data, and GSEA was used to analyze the preprocessed gene expression data to identify and calculate pathways and enrichment scores related to CMD. Finally, protein sequence features were extracted through the calculation of autocorrelation features. To verify the effectiveness of GSEA, this article conducted experimental analysis from four aspects: precision, receiver operating characteristic (ROC) curve, correlation, and potential drug targets, and compared them with Gene Regulatory Networks (GRN) and Random Forest (RF) methods. The results showed that compared to the GRN and RF methods, the average precision of GSEA improved by 0.11. The conclusion indicated that GSEA helped identify and explore potential drug targets and their interaction networks, providing new ideas for personalized quality of CMD.

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来源期刊
SLAS Technology
SLAS Technology Computer Science-Computer Science Applications
CiteScore
6.30
自引率
7.40%
发文量
47
审稿时长
106 days
期刊介绍: SLAS Technology emphasizes scientific and technical advances that enable and improve life sciences research and development; drug-delivery; diagnostics; biomedical and molecular imaging; and personalized and precision medicine. This includes high-throughput and other laboratory automation technologies; micro/nanotechnologies; analytical, separation and quantitative techniques; synthetic chemistry and biology; informatics (data analysis, statistics, bio, genomic and chemoinformatics); and more.
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