Pub Date : 2026-01-31DOI: 10.1016/j.slast.2026.100392
Ting Qin, Aparna Chandrasekaran, Jack Hoffman, Jason Shiers, Tarun Jain, Colin Sambrook Smith
Artificial intelligence (AI) holds immense potential to revolutionize drug discovery, yet its widespread adoption within scientific enterprises faces significant hurdles. Key challenges include ensuring user-friendliness, managing complex workflows, and integrating diverse datasets. To address these issues, we propose a novel framework that leverages the familiar Electronic Lab Notebook (ELN) paradigm. By formalizing AI workflows as ELN protocols and treating AI execution as ELN experiments, the proposed system provides a scalable, traceable, and user-oriented deployment strategy that aligns with existing laboratory practices. This ELN-based framework adheres to FAIR principles, enhancing data findability, accessibility, interoperability, and reusability. By mirroring the intuitive ELN interface, our solution empowers bench chemists to easily access and utilize cutting-edge AI tools, enabling them to move beyond purely synthetic roles and fully engage as medicinal chemists. This allows chemists to design compounds with real-time consideration of synthetic feasibility and to actively contribute to the drug design process with their practical expertise, thereby accelerating drug discovery efforts and maximizing the return on AI investments.
{"title":"Empowering chemists in drug design: Delivering AI solutions through an ELN framework at the enterprise level.","authors":"Ting Qin, Aparna Chandrasekaran, Jack Hoffman, Jason Shiers, Tarun Jain, Colin Sambrook Smith","doi":"10.1016/j.slast.2026.100392","DOIUrl":"10.1016/j.slast.2026.100392","url":null,"abstract":"<p><p>Artificial intelligence (AI) holds immense potential to revolutionize drug discovery, yet its widespread adoption within scientific enterprises faces significant hurdles. Key challenges include ensuring user-friendliness, managing complex workflows, and integrating diverse datasets. To address these issues, we propose a novel framework that leverages the familiar Electronic Lab Notebook (ELN) paradigm. By formalizing AI workflows as ELN protocols and treating AI execution as ELN experiments, the proposed system provides a scalable, traceable, and user-oriented deployment strategy that aligns with existing laboratory practices. This ELN-based framework adheres to FAIR principles, enhancing data findability, accessibility, interoperability, and reusability. By mirroring the intuitive ELN interface, our solution empowers bench chemists to easily access and utilize cutting-edge AI tools, enabling them to move beyond purely synthetic roles and fully engage as medicinal chemists. This allows chemists to design compounds with real-time consideration of synthetic feasibility and to actively contribute to the drug design process with their practical expertise, thereby accelerating drug discovery efforts and maximizing the return on AI investments.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100392"},"PeriodicalIF":3.7,"publicationDate":"2026-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146108080","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-31DOI: 10.1016/j.slast.2026.100401
Wenshan Chen, Peisong Ye, Xiuling Jiang
With the increasing aging population, the health management of older people has become an increasingly important issue. The author aims to meet the health needs of older people by designing a wearable device and a vital sign monitoring system based on optical sensing technology. The author analyzed the system's requirements and functions, provided the overall design architecture, and logically divided the system into the following functional modules: wireless environment monitoring, elderly physiological parameter collection, indoor area positioning, network node management, and the cloud platform. The functions that each module needs to implement were analyzed. Using the STM32F103C8T6 microcontroller as the core control device, combined with DS18B20 and MAX30102 sensors, it collects wrist temperature, heart rate, and blood oxygen data. The MPU6050 gyroscope is used to detect changes in human body deflection angle and acceleration, serving as the basis for fall detection. LCD screens and buttons are used to achieve human-computer interaction. The test results show that the average error between wrist temperature and forehead temperature is about 0.2°C, and the mistake with armpit temperature is about 0.6°C; In terms of heart rate measurement, the photodegradation method can obtain reliable human heart rate and blood oxygen signals, and the system measurement values match well with the heart rate image output by PGG; In terms of fall detection, the fusion of deflection angle and acceleration changes can improve the accuracy of fall detection to 95.2%. This system has the characteristics of small size, high precision, low power consumption, and ease of wear, and offers a wide range of application prospects.
{"title":"The application and management of wearable optical sensing technology in precision medical and health monitoring for the elderly.","authors":"Wenshan Chen, Peisong Ye, Xiuling Jiang","doi":"10.1016/j.slast.2026.100401","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100401","url":null,"abstract":"<p><p>With the increasing aging population, the health management of older people has become an increasingly important issue. The author aims to meet the health needs of older people by designing a wearable device and a vital sign monitoring system based on optical sensing technology. The author analyzed the system's requirements and functions, provided the overall design architecture, and logically divided the system into the following functional modules: wireless environment monitoring, elderly physiological parameter collection, indoor area positioning, network node management, and the cloud platform. The functions that each module needs to implement were analyzed. Using the STM32F103C8T6 microcontroller as the core control device, combined with DS18B20 and MAX30102 sensors, it collects wrist temperature, heart rate, and blood oxygen data. The MPU6050 gyroscope is used to detect changes in human body deflection angle and acceleration, serving as the basis for fall detection. LCD screens and buttons are used to achieve human-computer interaction. The test results show that the average error between wrist temperature and forehead temperature is about 0.2°C, and the mistake with armpit temperature is about 0.6°C; In terms of heart rate measurement, the photodegradation method can obtain reliable human heart rate and blood oxygen signals, and the system measurement values match well with the heart rate image output by PGG; In terms of fall detection, the fusion of deflection angle and acceleration changes can improve the accuracy of fall detection to 95.2%. This system has the characteristics of small size, high precision, low power consumption, and ease of wear, and offers a wide range of application prospects.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100401"},"PeriodicalIF":3.7,"publicationDate":"2026-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146108310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-30DOI: 10.1016/j.slast.2026.100400
Feifei Huang, Yong Wei, Lv Zidong, Lv Yang, Jie Fu
Objective: To explore the application value of DTI combined with DTT in brain function and volume in children with autism.
Methods: A total of 616 children with autism diagnosed from January 2020 to December 2022 (ASD group) and 91 healthy children with age and gender matching (control group) were included in the study. All subjects underwent DTI and DTT examinations. The DTI-DTT examination was conducted to analyze the Fractional Anisotropy (FA) values of key brain regions such as the corpus callosum and internal capsule, and the correlation and diagnostic efficacy were analyzed with the scores of the Autism Behavior Checklist (ABC).
Results: The total scores of ABC and each factor in the ASD group were significantly higher than those in the control group (p<0.05). The FA values of the knee joint and compressed part of the corpus callosum as well as the anterior and posterior limbs of the internal capsule in the ASD group were significantly higher than those in the control group (p<0.05). Relevant analysis showed that the FA values of the anterior and posterior limbs of the capsule in the ASD group were moderately positively correlated with the scores of sensory and body movement factors in the ABC scale (p<0.01). The FA values of the knee and compression parts of the corpus callosum were also moderately positively correlated with the communication and connection factor scores (p<0.01). ROC curve analysis indicated that the FA values of the above-mentioned brain regions had a high diagnostic value for ASD (AUC values were all >0.64).
Conclusion: The combination of DTI and DTT effectively reveals the microstructure abnormalities of the main white matter pathways (such as the corpus callosum and internal capsule) in children with autism. These abnormalities are significantly correlated with specific behavioral symptoms. This combined imaging technology provides important neuroimaging evidence for the early objective diagnosis and rehabilitation intervention of children with autism.
{"title":"Diffusion Tensor Imaging (DTI) Combined with Diffusion Tensor Tractography (DTT) in the Brain Function and Volumetric Imaging in Children with Autism.","authors":"Feifei Huang, Yong Wei, Lv Zidong, Lv Yang, Jie Fu","doi":"10.1016/j.slast.2026.100400","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100400","url":null,"abstract":"<p><strong>Objective: </strong>To explore the application value of DTI combined with DTT in brain function and volume in children with autism.</p><p><strong>Methods: </strong>A total of 616 children with autism diagnosed from January 2020 to December 2022 (ASD group) and 91 healthy children with age and gender matching (control group) were included in the study. All subjects underwent DTI and DTT examinations. The DTI-DTT examination was conducted to analyze the Fractional Anisotropy (FA) values of key brain regions such as the corpus callosum and internal capsule, and the correlation and diagnostic efficacy were analyzed with the scores of the Autism Behavior Checklist (ABC).</p><p><strong>Results: </strong>The total scores of ABC and each factor in the ASD group were significantly higher than those in the control group (p<0.05). The FA values of the knee joint and compressed part of the corpus callosum as well as the anterior and posterior limbs of the internal capsule in the ASD group were significantly higher than those in the control group (p<0.05). Relevant analysis showed that the FA values of the anterior and posterior limbs of the capsule in the ASD group were moderately positively correlated with the scores of sensory and body movement factors in the ABC scale (p<0.01). The FA values of the knee and compression parts of the corpus callosum were also moderately positively correlated with the communication and connection factor scores (p<0.01). ROC curve analysis indicated that the FA values of the above-mentioned brain regions had a high diagnostic value for ASD (AUC values were all >0.64).</p><p><strong>Conclusion: </strong>The combination of DTI and DTT effectively reveals the microstructure abnormalities of the main white matter pathways (such as the corpus callosum and internal capsule) in children with autism. These abnormalities are significantly correlated with specific behavioral symptoms. This combined imaging technology provides important neuroimaging evidence for the early objective diagnosis and rehabilitation intervention of children with autism.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100400"},"PeriodicalIF":3.7,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146101027","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Heart failure (HF) remains a major contributor to global morbidity and mortality, characterized by complex pathological processes including inflammation and aberrant intercellular communication. Shenfu Injection (SFI), a traditional Chinese herbal preparation, shows beneficial clinical outcomes in HF, but the precise molecular basis governing its effects on the cardiac microenvironment is not fully elucidated. We integrated single-cell RNA sequencing (scRNA-seq), bulk transcriptomics, and machine learning to investigate the cellular landscape, intercellular communication networks, and key apoptosis-related genes in HF. Cell-cell interaction analyses were performed to dissect signaling dynamics. The cardioprotective effects of SFI were validated in a murine HF model. scRNA-seq revealed a pro-inflammatory microenvironment characterized by immune cell activation and elevated apoptosis, particularly in fibroblast populations. Cell-cell communication analysis highlighted a dramatic increase in intercellular signaling activity in HF, with pro-inflammatory pathways like MAPK being central to this pathological crosstalk. Through LASSO regression and pathway analysis, LUM (Lumican) was identified as a fibroblast-specific, apoptosis-related hub gene. SFI treatment significantly downregulated LUM expression and the associated p38/p53 pathway, thereby limiting cardiomyocyte apoptosis, reducing inflammatory cytokine levels (TNF-α, IL-6), improving cardiac performance, and alleviating myocardial injury. This study identifies LUM as a critical regulator at the intersection of apoptosis, inflammation, and cellular communication in HF. We demonstrate that SFI exerts its cardioprotective effects by modulating the LUM-mediated signaling axis, thereby disrupting pathological intercellular signaling and mitigating inflammation. These findings offer novel mechanistic insights, positioning the LUM-centric inflammatory communication network as a potential therapeutic target for HF.
{"title":"Targeting LUM-mediated inflammatory cell communication and fibroblast apoptosis with SFI in Heart Failure.","authors":"Tiansheng Su, Tingyu Luo, Yu Lin, Jialing Liu, Baosheng Lai, Zhangwu Xiao","doi":"10.1016/j.slast.2026.100399","DOIUrl":"10.1016/j.slast.2026.100399","url":null,"abstract":"<p><p>Heart failure (HF) remains a major contributor to global morbidity and mortality, characterized by complex pathological processes including inflammation and aberrant intercellular communication. Shenfu Injection (SFI), a traditional Chinese herbal preparation, shows beneficial clinical outcomes in HF, but the precise molecular basis governing its effects on the cardiac microenvironment is not fully elucidated. We integrated single-cell RNA sequencing (scRNA-seq), bulk transcriptomics, and machine learning to investigate the cellular landscape, intercellular communication networks, and key apoptosis-related genes in HF. Cell-cell interaction analyses were performed to dissect signaling dynamics. The cardioprotective effects of SFI were validated in a murine HF model. scRNA-seq revealed a pro-inflammatory microenvironment characterized by immune cell activation and elevated apoptosis, particularly in fibroblast populations. Cell-cell communication analysis highlighted a dramatic increase in intercellular signaling activity in HF, with pro-inflammatory pathways like MAPK being central to this pathological crosstalk. Through LASSO regression and pathway analysis, LUM (Lumican) was identified as a fibroblast-specific, apoptosis-related hub gene. SFI treatment significantly downregulated LUM expression and the associated p38/p53 pathway, thereby limiting cardiomyocyte apoptosis, reducing inflammatory cytokine levels (TNF-α, IL-6), improving cardiac performance, and alleviating myocardial injury. This study identifies LUM as a critical regulator at the intersection of apoptosis, inflammation, and cellular communication in HF. We demonstrate that SFI exerts its cardioprotective effects by modulating the LUM-mediated signaling axis, thereby disrupting pathological intercellular signaling and mitigating inflammation. These findings offer novel mechanistic insights, positioning the LUM-centric inflammatory communication network as a potential therapeutic target for HF.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100399"},"PeriodicalIF":3.7,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146101037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The article details combined portable sample preparation and colorimetric detection using loop-mediated isothermal amplification (RT-LAMP) of Citrus tristeza virus (CTV) from citrus leaves. The sample preparation employs an OmniLyse micro-homogenizer and cellulose paper disks to extract and isolate total nucleic acids in less than 15 minutes. Primer and dimethyl sulfoxide (DMSO) concentrations were optimized to minimize RT-LAMP assay reaction times and maximize the delay in the appearance of false positives due to non-specific amplification, respectively. The CTV primers were assessed against a panel of 24 CTV-positive isolates and 6 non-CTV pathogen isolates. To adapt the protocol for cold-chain-free field deployment, a lyophilized RT-LAMP reagent mix was developed and its rehydration solution was optimized to minimize false positives. In a greenhouse setting, the micro-homogenizer successfully extracted and isolated nucleic acids from CTV-positive trees, followed by the lyophilized RT-LAMP assay positively detecting the pathogen within 35 minutes. This study establishes the feasibility of quick and portable CTV detection without access to laboratory equipment, paving the way for larger-scale field studies, comprehensive validation of assay performance, and potential extension to other plant pathogens.
{"title":"Rapid colorimetric detection of Citrus tristeza virus combining portable sample preparation and reverse transcription-loop mediated isothermal amplification.","authors":"Chia-Wei Liu, Sohrab Bodaghi, Manjunath L Keremane, Brent Kalish, Georgios Vidalakis, Hideaki Tsutsui","doi":"10.1016/j.slast.2026.100398","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100398","url":null,"abstract":"<p><p>The article details combined portable sample preparation and colorimetric detection using loop-mediated isothermal amplification (RT-LAMP) of Citrus tristeza virus (CTV) from citrus leaves. The sample preparation employs an OmniLyse micro-homogenizer and cellulose paper disks to extract and isolate total nucleic acids in less than 15 minutes. Primer and dimethyl sulfoxide (DMSO) concentrations were optimized to minimize RT-LAMP assay reaction times and maximize the delay in the appearance of false positives due to non-specific amplification, respectively. The CTV primers were assessed against a panel of 24 CTV-positive isolates and 6 non-CTV pathogen isolates. To adapt the protocol for cold-chain-free field deployment, a lyophilized RT-LAMP reagent mix was developed and its rehydration solution was optimized to minimize false positives. In a greenhouse setting, the micro-homogenizer successfully extracted and isolated nucleic acids from CTV-positive trees, followed by the lyophilized RT-LAMP assay positively detecting the pathogen within 35 minutes. This study establishes the feasibility of quick and portable CTV detection without access to laboratory equipment, paving the way for larger-scale field studies, comprehensive validation of assay performance, and potential extension to other plant pathogens.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100398"},"PeriodicalIF":3.7,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146101007","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Bayesian optimization is efficient even with a small amount of data and is used in engineering and in science, including biology and chemistry. In Bayesian optimization, a parameterized model with an uncertainty is fitted to explain the experimental data, and then the model suggests parameters that would most likely improve the results. Batch Bayesian optimization reduces the processing time of optimization by parallelizing experiments. However, batch Bayesian optimization cannot be applied if the number of parallelized experiments is limited by the cost or scarcity of equipment; in such cases, sequential methods require an unrealistic amount of time. In this study, we developed pipelining Bayesian optimization (PipeBO) to reduce the processing time of optimization even with a limited number of parallel experiments. PipeBO was inspired by the pipelining of central processing unit architecture, which divides computational tasks into multiple processes. PipeBO was designed to achieve experiment parallelization by overlapping various processes of the experiments. PipeBO uses the results of completed experiments to update the parameters of running parallelized experiments. PipeBO was mathematically formulated by modeling experiments as multiple processes with asynchronous result arrival, enabling partial model updates in a pipelined fashion. Using the Black-Box Optimization Benchmarking, which consists of 24 benchmark functions, we compared PipeBO with the sequential Bayesian optimization methods. PipeBO reduced the average processing time of optimization to about 56% for the experiments that consisted of two processes or even less for those with more processes for 20 out of the 24 functions. Overall, PipeBO parallelizes Bayesian optimization in experimental equipment-limited situations so that efficient optimization can be achieved.
{"title":"Asynchronous batch Bayesian optimization with pipelining evaluations in experimental equipment-limited situations.","authors":"Yujin Taguchi, Yusuke Shibuya, Yusuke Hiki, Takashi Morikura, Takahiro G Yamada, Akira Funahashi","doi":"10.1016/j.slast.2026.100396","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100396","url":null,"abstract":"<p><p>Bayesian optimization is efficient even with a small amount of data and is used in engineering and in science, including biology and chemistry. In Bayesian optimization, a parameterized model with an uncertainty is fitted to explain the experimental data, and then the model suggests parameters that would most likely improve the results. Batch Bayesian optimization reduces the processing time of optimization by parallelizing experiments. However, batch Bayesian optimization cannot be applied if the number of parallelized experiments is limited by the cost or scarcity of equipment; in such cases, sequential methods require an unrealistic amount of time. In this study, we developed pipelining Bayesian optimization (PipeBO) to reduce the processing time of optimization even with a limited number of parallel experiments. PipeBO was inspired by the pipelining of central processing unit architecture, which divides computational tasks into multiple processes. PipeBO was designed to achieve experiment parallelization by overlapping various processes of the experiments. PipeBO uses the results of completed experiments to update the parameters of running parallelized experiments. PipeBO was mathematically formulated by modeling experiments as multiple processes with asynchronous result arrival, enabling partial model updates in a pipelined fashion. Using the Black-Box Optimization Benchmarking, which consists of 24 benchmark functions, we compared PipeBO with the sequential Bayesian optimization methods. PipeBO reduced the average processing time of optimization to about 56% for the experiments that consisted of two processes or even less for those with more processes for 20 out of the 24 functions. Overall, PipeBO parallelizes Bayesian optimization in experimental equipment-limited situations so that efficient optimization can be achieved.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100396"},"PeriodicalIF":3.7,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146101077","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study investigates the potential of Pseudomonas songnenensis (P. songnenensis) in degrading β-lactam antibiotics through enzymatic hydrolysis by β-lactamase (β-Lase). Faecal soil samples were collected from ten poultry farms in Tamil Nadu, India, between June and July 2023. Each housing 10,000-50,000 birds and is routinely administered antibiotics. Among the bacterial isolates obtained, strain 18 showed the highest degradation activity. Molecular docking analysis revealed stable enzyme-antibiotic interactions, with Amoxicillin showing the strongest binding affinity due to multiple hydrogen bonds. The β-Lase enzyme effectively hydrolyses the β-lactam ring, breaking the amide bond and rendering antibiotics inactive. This stepwise degradation mechanism contributes to reducing antibiotic persistence in the environment and offers insights into microbial-driven bioremediation strategies. The findings highlight the novelty of using P. songnenensis for antibiotic degradation and emphasise its potential application in mitigating antibiotic pollution in livestock farming and food production systems.
{"title":"Exploring Antibiotic Degradation Mechanisms: Molecular Docking Analysis of Beta-Lactamase Enzymes from Pseudomonas songnenensis.","authors":"Pratibha T, Subash Vetri Selvi, Uyen Khanh Pham, Ling Shing Wong, Sinouvassane Djearamane, Jui-Jen Chang, Prakash Balu, Wesley Wei-Wen Hsiao","doi":"10.1016/j.slast.2026.100397","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100397","url":null,"abstract":"<p><p>This study investigates the potential of Pseudomonas songnenensis (P. songnenensis) in degrading β-lactam antibiotics through enzymatic hydrolysis by β-lactamase (β-Lase). Faecal soil samples were collected from ten poultry farms in Tamil Nadu, India, between June and July 2023. Each housing 10,000-50,000 birds and is routinely administered antibiotics. Among the bacterial isolates obtained, strain 18 showed the highest degradation activity. Molecular docking analysis revealed stable enzyme-antibiotic interactions, with Amoxicillin showing the strongest binding affinity due to multiple hydrogen bonds. The β-Lase enzyme effectively hydrolyses the β-lactam ring, breaking the amide bond and rendering antibiotics inactive. This stepwise degradation mechanism contributes to reducing antibiotic persistence in the environment and offers insights into microbial-driven bioremediation strategies. The findings highlight the novelty of using P. songnenensis for antibiotic degradation and emphasise its potential application in mitigating antibiotic pollution in livestock farming and food production systems.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100397"},"PeriodicalIF":3.7,"publicationDate":"2026-01-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146068663","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-22DOI: 10.1016/j.slast.2026.100394
Sajjad Saleem, Muhammad Zaheer Sajid, Abida Sharif, Jarrar Amjad, Anwaar UlHaq, Haya Aldossary
Lung diseases such as pneumonia, tuberculosis, COVID-19, and lung cancer remain significant global health challenges that demand rapid and accurate diagnosis to improve patient outcomes. This study proposes NASNet-ViT, a novel deep learning framework that integrates the powerful convolutional feature extraction of NASNet with the global attention mechanisms of the Vision Transformer (ViT). To enhance diagnostic precision, a multi-stage preprocessing pipeline, termed MixProcessing, is introduced, combining wavelet transform decomposition, adaptive histogram equalization, and morphological filtering to improve image quality and feature clarity. The proposed NASNet-ViT model classifies lung images into five categories, normal, lung cancer, COVID-19, pneumonia, and tuberculosis achieving outstanding performance metrics: 98.9% accuracy, 0.99 sensitivity, 0.989 F1-score, and 0.987 specificity. Compared to established architectures such as MixNet-LD, D-ResNet, MobileNet, and ResNet50, NASNet-ViT demonstrates superior accuracy while maintaining a lightweight model size of only 25.6 MB and fast inference time of 12.4 seconds, making it practical for deployment in real-time, resource-constrained clinical environments. This research advances the field of medical image analysis by offering a robust and scalable AI solution capable of supporting clinicians in timely and precise lung disease diagnosis.
{"title":"An Integrated Deep Learning Framework Leveraging NASNet and Vision Transformer with MixProcessing for Accurate and Precise Diagnosis of Lung Diseases.","authors":"Sajjad Saleem, Muhammad Zaheer Sajid, Abida Sharif, Jarrar Amjad, Anwaar UlHaq, Haya Aldossary","doi":"10.1016/j.slast.2026.100394","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100394","url":null,"abstract":"<p><p>Lung diseases such as pneumonia, tuberculosis, COVID-19, and lung cancer remain significant global health challenges that demand rapid and accurate diagnosis to improve patient outcomes. This study proposes NASNet-ViT, a novel deep learning framework that integrates the powerful convolutional feature extraction of NASNet with the global attention mechanisms of the Vision Transformer (ViT). To enhance diagnostic precision, a multi-stage preprocessing pipeline, termed MixProcessing, is introduced, combining wavelet transform decomposition, adaptive histogram equalization, and morphological filtering to improve image quality and feature clarity. The proposed NASNet-ViT model classifies lung images into five categories, normal, lung cancer, COVID-19, pneumonia, and tuberculosis achieving outstanding performance metrics: 98.9% accuracy, 0.99 sensitivity, 0.989 F1-score, and 0.987 specificity. Compared to established architectures such as MixNet-LD, D-ResNet, MobileNet, and ResNet50, NASNet-ViT demonstrates superior accuracy while maintaining a lightweight model size of only 25.6 MB and fast inference time of 12.4 seconds, making it practical for deployment in real-time, resource-constrained clinical environments. This research advances the field of medical image analysis by offering a robust and scalable AI solution capable of supporting clinicians in timely and precise lung disease diagnosis.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100394"},"PeriodicalIF":3.7,"publicationDate":"2026-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146044362","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-22DOI: 10.1016/j.slast.2026.100395
Amal Alshardan , Yazeed Alashban , Mohammed Alahmadi , Adel Albshri , Rakan Alanazi , Hanadi Alkhudhayr , Nujud Aloshban , Monir Abdullah
Neurodevelopmental disorders (NDDs) arise from disruptions in molecular programs that guide early brain formation, yet the specific epigenetic and transcriptional mechanisms underlying these conditions remain poorly defined. Recent advances in single-cell technologies allow parallel profiling of gene expression, chromatin accessibility, and DNA methylation within individual cells; however, most existing studies remain unimodal and therefore unable to resolve convergent dysregulation across molecular layers. This study presents an integrative single-cell multi-omics framework that combines scRNA-seq, scATAC-seq, and single-cell DNA methylation data from developing human and mouse brain tissue, as well as patient-derived neural progenitor models. By applying canonical correlation analysis, manifold alignment, latent-variable modeling, and network inference, we construct cell-type-specific epigenetic regulatory networks and quantify how chromatin accessibility, methylation state, and transcriptional output collectively deviate in NDD-relevant cell populations. Our analyses reveal that neural progenitors and excitatory neurons exhibit the strongest multimodal alterations, characterized by promoter hypermethylation, loss of enhancer accessibility, and downregulation of neurogenic and synaptic pathways. Integrative network modeling identifies SOX11 and CHD8 as central, multi-layer master regulators whose disrupted activity contributes to aberrant lineage specification. Quantitative evaluation of the Single-Cell Multi-Omics Network demonstrates high enhancer–gene linkage accuracy, consistent cross-species regulatory conservation, and efficient regulatory module reconstruction. Collectively, this integrative approach provides a unified view of epigenetic and transcriptional dysregulation in NDDs, generating mechanistic hypotheses with potential implications for biomarker discovery and targeted therapeutic intervention.
{"title":"Integrative single‑cell multi‑omics network analysis to elucidate epigenetic regulation in neurodevelopmental disorders","authors":"Amal Alshardan , Yazeed Alashban , Mohammed Alahmadi , Adel Albshri , Rakan Alanazi , Hanadi Alkhudhayr , Nujud Aloshban , Monir Abdullah","doi":"10.1016/j.slast.2026.100395","DOIUrl":"10.1016/j.slast.2026.100395","url":null,"abstract":"<div><div>Neurodevelopmental disorders (NDDs) arise from disruptions in molecular programs that guide early brain formation, yet the specific epigenetic and transcriptional mechanisms underlying these conditions remain poorly defined. Recent advances in single-cell technologies allow parallel profiling of gene expression, chromatin accessibility, and DNA methylation within individual cells; however, most existing studies remain unimodal and therefore unable to resolve convergent dysregulation across molecular layers. This study presents an integrative single-cell multi-omics framework that combines scRNA-seq, scATAC-seq, and single-cell DNA methylation data from developing human and mouse brain tissue, as well as patient-derived neural progenitor models. By applying canonical correlation analysis, manifold alignment, latent-variable modeling, and network inference, we construct cell-type-specific epigenetic regulatory networks and quantify how chromatin accessibility, methylation state, and transcriptional output collectively deviate in NDD-relevant cell populations. Our analyses reveal that neural progenitors and excitatory neurons exhibit the strongest multimodal alterations, characterized by promoter hypermethylation, loss of enhancer accessibility, and downregulation of neurogenic and synaptic pathways. Integrative network modeling identifies SOX11 and CHD8 as central, multi-layer master regulators whose disrupted activity contributes to aberrant lineage specification. Quantitative evaluation of the Single-Cell Multi-Omics Network demonstrates high enhancer–gene linkage accuracy, consistent cross-species regulatory conservation, and efficient regulatory module reconstruction. Collectively, this integrative approach provides a unified view of epigenetic and transcriptional dysregulation in NDDs, generating mechanistic hypotheses with potential implications for biomarker discovery and targeted therapeutic intervention.</div></div>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":"37 ","pages":"Article 100395"},"PeriodicalIF":3.7,"publicationDate":"2026-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146044385","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-21DOI: 10.1016/j.slast.2026.100391
Yanqin Huang , Yuqian Lin , Wurui Guo , Haiping Huang , Haiting Huang , Peng Huang , Xu Lin
'HSP90AB1 protein macromolecule plays an important role in various cellular stress responses, but its specific mechanism in podiatocyte injury and mitochondrial dysfunction remains unclear. The aim of this study was to investigate the mechanism of how 'HSP90AB1 mediates mitochondrial dysfunction and leads to podiocyte injury through regulation of ATP5A1 and PARK2. Clinical podocyte samples were collected and the MPC5 mouse podocyte cell line was used for experiments. The interaction of 'HSP90AB1 with ATP5A1 and PARK2 was analyzed by transcriptome sequencing, cell culture, 'HSP90AB1 overexpression and knockdown construction, combined immunoprecipitation (CoIP) and immunofluorescence detection. CCK8 was used to measure cell viability, Westernblot and qPCR were used to assess protein and mRNA expression levels, and statistical methods were used to analyze the data. Bioinformatics analysis revealed physical or functional interactions between 'HSP90AB1, ATP5A1, and PARK2 proteins. The interaction between 'HSP90AB1 and these two proteins was verified by cell experiments, and 'HSP90AB1 played an important role in podiatocyte injury. In ADR-induced podocyte injury model, mRNA and protein expressions of 'HSP90AB1, ATP5A1 and PARK2 were significantly changed, and the expression of mitochondrial autophagy related proteins was also changed. Further analysis showed that the interaction between 'HSP90AB1, ATP5A1 and PARK2 played a key role in the process of podiocyte injury. This study revealed that 'HSP90AB1 mediates mitochondrial dysfunction by regulating the interaction of ATP5A1 and PARK2, thereby promoting podiocyte injury. This discovery provides new potential targets for the treatment of podocyte injury and contributes to the understanding of the pathological mechanisms of related diseases.
{"title":"Mechanism study on promoting podocyte injury by regulating ATPA1 and PARK2 mediated mitochondrial dysfunction: Immunofluorescence image analysis","authors":"Yanqin Huang , Yuqian Lin , Wurui Guo , Haiping Huang , Haiting Huang , Peng Huang , Xu Lin","doi":"10.1016/j.slast.2026.100391","DOIUrl":"10.1016/j.slast.2026.100391","url":null,"abstract":"<div><div>'HSP90AB1 protein macromolecule plays an important role in various cellular stress responses, but its specific mechanism in podiatocyte injury and mitochondrial dysfunction remains unclear. The aim of this study was to investigate the mechanism of how 'HSP90AB1 mediates mitochondrial dysfunction and leads to podiocyte injury through regulation of ATP5A1 and PARK2. Clinical podocyte samples were collected and the MPC5 mouse podocyte cell line was used for experiments. The interaction of 'HSP90AB1 with ATP5A1 and PARK2 was analyzed by transcriptome sequencing, cell culture, 'HSP90AB1 overexpression and knockdown construction, combined immunoprecipitation (CoIP) and immunofluorescence detection. CCK8 was used to measure cell viability, Westernblot and qPCR were used to assess protein and mRNA expression levels, and statistical methods were used to analyze the data. Bioinformatics analysis revealed physical or functional interactions between 'HSP90AB1, ATP5A1, and PARK2 proteins. The interaction between 'HSP90AB1 and these two proteins was verified by cell experiments, and 'HSP90AB1 played an important role in podiatocyte injury. In ADR-induced podocyte injury model, mRNA and protein expressions of 'HSP90AB1, ATP5A1 and PARK2 were significantly changed, and the expression of mitochondrial autophagy related proteins was also changed. Further analysis showed that the interaction between 'HSP90AB1, ATP5A1 and PARK2 played a key role in the process of podiocyte injury. This study revealed that 'HSP90AB1 mediates mitochondrial dysfunction by regulating the interaction of ATP5A1 and PARK2, thereby promoting podiocyte injury. This discovery provides new potential targets for the treatment of podocyte injury and contributes to the understanding of the pathological mechanisms of related diseases.</div></div>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":"37 ","pages":"Article 100391"},"PeriodicalIF":3.7,"publicationDate":"2026-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146039878","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}