首页 > 最新文献

SLAS Technology最新文献

英文 中文
Empowering chemists in drug design: Delivering AI solutions through an ELN framework at the enterprise level. 授权化学家进行药物设计:通过企业层面的ELN框架提供人工智能解决方案。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-31 DOI: 10.1016/j.slast.2026.100392
Ting Qin, Aparna Chandrasekaran, Jack Hoffman, Jason Shiers, Tarun Jain, Colin Sambrook Smith

Artificial intelligence (AI) holds immense potential to revolutionize drug discovery, yet its widespread adoption within scientific enterprises faces significant hurdles. Key challenges include ensuring user-friendliness, managing complex workflows, and integrating diverse datasets. To address these issues, we propose a novel framework that leverages the familiar Electronic Lab Notebook (ELN) paradigm. By formalizing AI workflows as ELN protocols and treating AI execution as ELN experiments, the proposed system provides a scalable, traceable, and user-oriented deployment strategy that aligns with existing laboratory practices. This ELN-based framework adheres to FAIR principles, enhancing data findability, accessibility, interoperability, and reusability. By mirroring the intuitive ELN interface, our solution empowers bench chemists to easily access and utilize cutting-edge AI tools, enabling them to move beyond purely synthetic roles and fully engage as medicinal chemists. This allows chemists to design compounds with real-time consideration of synthetic feasibility and to actively contribute to the drug design process with their practical expertise, thereby accelerating drug discovery efforts and maximizing the return on AI investments.

人工智能(AI)具有革新药物发现的巨大潜力,但其在科学企业中的广泛应用面临着重大障碍。主要的挑战包括确保用户友好性、管理复杂的工作流程和集成不同的数据集。为了解决这些问题,我们提出了一个利用熟悉的电子实验室笔记本(ELN)范例的新框架。通过将AI工作流形式化为ELN协议,并将AI执行视为ELN实验,所提议的系统提供了与现有实验室实践相一致的可扩展、可跟踪和面向用户的部署策略。这个基于eln的框架遵循FAIR原则,增强了数据的可查找性、可访问性、互操作性和可重用性。通过镜像直观的ELN界面,我们的解决方案使实验室化学家能够轻松访问和利用尖端的人工智能工具,使他们能够超越纯粹的合成角色,充分参与药物化学家的工作。这使得化学家能够在实时考虑合成可行性的情况下设计化合物,并利用他们的实际专业知识积极参与药物设计过程,从而加快药物发现工作,最大限度地提高人工智能投资的回报。
{"title":"Empowering chemists in drug design: Delivering AI solutions through an ELN framework at the enterprise level.","authors":"Ting Qin, Aparna Chandrasekaran, Jack Hoffman, Jason Shiers, Tarun Jain, Colin Sambrook Smith","doi":"10.1016/j.slast.2026.100392","DOIUrl":"10.1016/j.slast.2026.100392","url":null,"abstract":"<p><p>Artificial intelligence (AI) holds immense potential to revolutionize drug discovery, yet its widespread adoption within scientific enterprises faces significant hurdles. Key challenges include ensuring user-friendliness, managing complex workflows, and integrating diverse datasets. To address these issues, we propose a novel framework that leverages the familiar Electronic Lab Notebook (ELN) paradigm. By formalizing AI workflows as ELN protocols and treating AI execution as ELN experiments, the proposed system provides a scalable, traceable, and user-oriented deployment strategy that aligns with existing laboratory practices. This ELN-based framework adheres to FAIR principles, enhancing data findability, accessibility, interoperability, and reusability. By mirroring the intuitive ELN interface, our solution empowers bench chemists to easily access and utilize cutting-edge AI tools, enabling them to move beyond purely synthetic roles and fully engage as medicinal chemists. This allows chemists to design compounds with real-time consideration of synthetic feasibility and to actively contribute to the drug design process with their practical expertise, thereby accelerating drug discovery efforts and maximizing the return on AI investments.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100392"},"PeriodicalIF":3.7,"publicationDate":"2026-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146108080","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The application and management of wearable optical sensing technology in precision medical and health monitoring for the elderly. 可穿戴光学传感技术在老年人精准医疗健康监测中的应用与管理。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-31 DOI: 10.1016/j.slast.2026.100401
Wenshan Chen, Peisong Ye, Xiuling Jiang

With the increasing aging population, the health management of older people has become an increasingly important issue. The author aims to meet the health needs of older people by designing a wearable device and a vital sign monitoring system based on optical sensing technology. The author analyzed the system's requirements and functions, provided the overall design architecture, and logically divided the system into the following functional modules: wireless environment monitoring, elderly physiological parameter collection, indoor area positioning, network node management, and the cloud platform. The functions that each module needs to implement were analyzed. Using the STM32F103C8T6 microcontroller as the core control device, combined with DS18B20 and MAX30102 sensors, it collects wrist temperature, heart rate, and blood oxygen data. The MPU6050 gyroscope is used to detect changes in human body deflection angle and acceleration, serving as the basis for fall detection. LCD screens and buttons are used to achieve human-computer interaction. The test results show that the average error between wrist temperature and forehead temperature is about 0.2°C, and the mistake with armpit temperature is about 0.6°C; In terms of heart rate measurement, the photodegradation method can obtain reliable human heart rate and blood oxygen signals, and the system measurement values match well with the heart rate image output by PGG; In terms of fall detection, the fusion of deflection angle and acceleration changes can improve the accuracy of fall detection to 95.2%. This system has the characteristics of small size, high precision, low power consumption, and ease of wear, and offers a wide range of application prospects.

随着人口老龄化的日益加剧,老年人的健康管理已成为一个日益重要的问题。为了满足老年人的健康需求,笔者设计了一款可穿戴设备和一款基于光学传感技术的生命体征监测系统。分析了系统的需求和功能,给出了总体设计架构,并在逻辑上将系统划分为以下功能模块:无线环境监测、老年人生理参数采集、室内区域定位、网络节点管理、云平台。分析了各模块需要实现的功能。以STM32F103C8T6单片机为核心控制器件,结合DS18B20和MAX30102传感器采集手腕温度、心率、血氧等数据。MPU6050陀螺仪用于检测人体偏角和加速度的变化,作为跌倒检测的基础。采用液晶屏和按键实现人机交互。测试结果表明,腕部温度与前额温度的平均误差约为0.2℃,与腋下温度的误差约为0.6℃;在心率测量方面,光降解方法可以获得可靠的人体心率和血氧信号,系统测量值与PGG输出的心率图像吻合较好;在跌倒检测方面,将偏转角度和加速度变化融合,可以将跌倒检测的准确率提高到95.2%。该系统具有体积小、精度高、功耗低、易磨损等特点,具有广泛的应用前景。
{"title":"The application and management of wearable optical sensing technology in precision medical and health monitoring for the elderly.","authors":"Wenshan Chen, Peisong Ye, Xiuling Jiang","doi":"10.1016/j.slast.2026.100401","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100401","url":null,"abstract":"<p><p>With the increasing aging population, the health management of older people has become an increasingly important issue. The author aims to meet the health needs of older people by designing a wearable device and a vital sign monitoring system based on optical sensing technology. The author analyzed the system's requirements and functions, provided the overall design architecture, and logically divided the system into the following functional modules: wireless environment monitoring, elderly physiological parameter collection, indoor area positioning, network node management, and the cloud platform. The functions that each module needs to implement were analyzed. Using the STM32F103C8T6 microcontroller as the core control device, combined with DS18B20 and MAX30102 sensors, it collects wrist temperature, heart rate, and blood oxygen data. The MPU6050 gyroscope is used to detect changes in human body deflection angle and acceleration, serving as the basis for fall detection. LCD screens and buttons are used to achieve human-computer interaction. The test results show that the average error between wrist temperature and forehead temperature is about 0.2°C, and the mistake with armpit temperature is about 0.6°C; In terms of heart rate measurement, the photodegradation method can obtain reliable human heart rate and blood oxygen signals, and the system measurement values match well with the heart rate image output by PGG; In terms of fall detection, the fusion of deflection angle and acceleration changes can improve the accuracy of fall detection to 95.2%. This system has the characteristics of small size, high precision, low power consumption, and ease of wear, and offers a wide range of application prospects.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100401"},"PeriodicalIF":3.7,"publicationDate":"2026-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146108310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diffusion Tensor Imaging (DTI) Combined with Diffusion Tensor Tractography (DTT) in the Brain Function and Volumetric Imaging in Children with Autism. 弥散张量成像(DTI)联合弥散张量束成像(DTT)在自闭症儿童脑功能和体积成像中的应用。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-30 DOI: 10.1016/j.slast.2026.100400
Feifei Huang, Yong Wei, Lv Zidong, Lv Yang, Jie Fu

Objective: To explore the application value of DTI combined with DTT in brain function and volume in children with autism.

Methods: A total of 616 children with autism diagnosed from January 2020 to December 2022 (ASD group) and 91 healthy children with age and gender matching (control group) were included in the study. All subjects underwent DTI and DTT examinations. The DTI-DTT examination was conducted to analyze the Fractional Anisotropy (FA) values of key brain regions such as the corpus callosum and internal capsule, and the correlation and diagnostic efficacy were analyzed with the scores of the Autism Behavior Checklist (ABC).

Results: The total scores of ABC and each factor in the ASD group were significantly higher than those in the control group (p<0.05). The FA values of the knee joint and compressed part of the corpus callosum as well as the anterior and posterior limbs of the internal capsule in the ASD group were significantly higher than those in the control group (p<0.05). Relevant analysis showed that the FA values of the anterior and posterior limbs of the capsule in the ASD group were moderately positively correlated with the scores of sensory and body movement factors in the ABC scale (p<0.01). The FA values of the knee and compression parts of the corpus callosum were also moderately positively correlated with the communication and connection factor scores (p<0.01). ROC curve analysis indicated that the FA values of the above-mentioned brain regions had a high diagnostic value for ASD (AUC values were all >0.64).

Conclusion: The combination of DTI and DTT effectively reveals the microstructure abnormalities of the main white matter pathways (such as the corpus callosum and internal capsule) in children with autism. These abnormalities are significantly correlated with specific behavioral symptoms. This combined imaging technology provides important neuroimaging evidence for the early objective diagnosis and rehabilitation intervention of children with autism.

目的:探讨DTI联合DTT在自闭症儿童脑功能和脑容量中的应用价值。方法:选取2020年1月~ 2022年12月诊断为自闭症的儿童616例(ASD组)和年龄、性别匹配的健康儿童91例(对照组)作为研究对象。所有受试者均行DTI和DTT检查。采用DTI-DTT检查,分析胼胝体、内囊等脑关键区域分数各向异性(FA)值,并与自闭症行为检查表(ABC)评分进行相关性分析及诊断效果分析。结果:ASD组ABC总分及各因子得分均显著高于对照组(p0.64)。结论:DTI联合DTT能有效揭示自闭症儿童脑白质主要通路(如胼胝体和内囊)的微结构异常。这些异常与特定行为症状显著相关。该联合成像技术为自闭症儿童的早期客观诊断和康复干预提供了重要的神经影像学依据。
{"title":"Diffusion Tensor Imaging (DTI) Combined with Diffusion Tensor Tractography (DTT) in the Brain Function and Volumetric Imaging in Children with Autism.","authors":"Feifei Huang, Yong Wei, Lv Zidong, Lv Yang, Jie Fu","doi":"10.1016/j.slast.2026.100400","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100400","url":null,"abstract":"<p><strong>Objective: </strong>To explore the application value of DTI combined with DTT in brain function and volume in children with autism.</p><p><strong>Methods: </strong>A total of 616 children with autism diagnosed from January 2020 to December 2022 (ASD group) and 91 healthy children with age and gender matching (control group) were included in the study. All subjects underwent DTI and DTT examinations. The DTI-DTT examination was conducted to analyze the Fractional Anisotropy (FA) values of key brain regions such as the corpus callosum and internal capsule, and the correlation and diagnostic efficacy were analyzed with the scores of the Autism Behavior Checklist (ABC).</p><p><strong>Results: </strong>The total scores of ABC and each factor in the ASD group were significantly higher than those in the control group (p<0.05). The FA values of the knee joint and compressed part of the corpus callosum as well as the anterior and posterior limbs of the internal capsule in the ASD group were significantly higher than those in the control group (p<0.05). Relevant analysis showed that the FA values of the anterior and posterior limbs of the capsule in the ASD group were moderately positively correlated with the scores of sensory and body movement factors in the ABC scale (p<0.01). The FA values of the knee and compression parts of the corpus callosum were also moderately positively correlated with the communication and connection factor scores (p<0.01). ROC curve analysis indicated that the FA values of the above-mentioned brain regions had a high diagnostic value for ASD (AUC values were all >0.64).</p><p><strong>Conclusion: </strong>The combination of DTI and DTT effectively reveals the microstructure abnormalities of the main white matter pathways (such as the corpus callosum and internal capsule) in children with autism. These abnormalities are significantly correlated with specific behavioral symptoms. This combined imaging technology provides important neuroimaging evidence for the early objective diagnosis and rehabilitation intervention of children with autism.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100400"},"PeriodicalIF":3.7,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146101027","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Targeting LUM-mediated inflammatory cell communication and fibroblast apoptosis with SFI in Heart Failure. 心衰中SFI靶向lm介导的炎症细胞通讯和成纤维细胞凋亡。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-30 DOI: 10.1016/j.slast.2026.100399
Tiansheng Su, Tingyu Luo, Yu Lin, Jialing Liu, Baosheng Lai, Zhangwu Xiao

Heart failure (HF) remains a major contributor to global morbidity and mortality, characterized by complex pathological processes including inflammation and aberrant intercellular communication. Shenfu Injection (SFI), a traditional Chinese herbal preparation, shows beneficial clinical outcomes in HF, but the precise molecular basis governing its effects on the cardiac microenvironment is not fully elucidated. We integrated single-cell RNA sequencing (scRNA-seq), bulk transcriptomics, and machine learning to investigate the cellular landscape, intercellular communication networks, and key apoptosis-related genes in HF. Cell-cell interaction analyses were performed to dissect signaling dynamics. The cardioprotective effects of SFI were validated in a murine HF model. scRNA-seq revealed a pro-inflammatory microenvironment characterized by immune cell activation and elevated apoptosis, particularly in fibroblast populations. Cell-cell communication analysis highlighted a dramatic increase in intercellular signaling activity in HF, with pro-inflammatory pathways like MAPK being central to this pathological crosstalk. Through LASSO regression and pathway analysis, LUM (Lumican) was identified as a fibroblast-specific, apoptosis-related hub gene. SFI treatment significantly downregulated LUM expression and the associated p38/p53 pathway, thereby limiting cardiomyocyte apoptosis, reducing inflammatory cytokine levels (TNF-α, IL-6), improving cardiac performance, and alleviating myocardial injury. This study identifies LUM as a critical regulator at the intersection of apoptosis, inflammation, and cellular communication in HF. We demonstrate that SFI exerts its cardioprotective effects by modulating the LUM-mediated signaling axis, thereby disrupting pathological intercellular signaling and mitigating inflammation. These findings offer novel mechanistic insights, positioning the LUM-centric inflammatory communication network as a potential therapeutic target for HF.

心力衰竭(HF)仍然是全球发病率和死亡率的主要原因,其特点是复杂的病理过程,包括炎症和异常的细胞间通讯。中药制剂参附注射液(SFI)对心力衰竭有良好的临床疗效,但其影响心脏微环境的确切分子基础尚未完全阐明。我们整合了单细胞RNA测序(scRNA-seq)、大量转录组学和机器学习来研究HF的细胞景观、细胞间通信网络和关键凋亡相关基因。细胞-细胞相互作用分析进行解剖信号动力学。在小鼠HF模型中验证了SFI的心脏保护作用。scRNA-seq揭示了以免疫细胞活化和细胞凋亡升高为特征的促炎微环境,特别是在成纤维细胞群体中。细胞间通讯分析强调了HF细胞间信号活动的急剧增加,促炎通路如MAPK是这种病理串扰的核心。通过LASSO回归和通路分析,确定了LUM (Lumican)是一个成纤维细胞特异性的、凋亡相关的枢纽基因。SFI治疗可显著下调LUM表达及相关p38/p53通路,从而限制心肌细胞凋亡,降低炎症细胞因子(TNF-α、IL-6)水平,改善心脏机能,减轻心肌损伤。本研究发现,在HF中,LUM是凋亡、炎症和细胞通讯的关键调节因子。我们证明SFI通过调节lum介导的信号轴发挥其心脏保护作用,从而破坏病理性细胞间信号传导并减轻炎症。这些发现提供了新的机制见解,将以lum为中心的炎症通讯网络定位为心衰的潜在治疗靶点。
{"title":"Targeting LUM-mediated inflammatory cell communication and fibroblast apoptosis with SFI in Heart Failure.","authors":"Tiansheng Su, Tingyu Luo, Yu Lin, Jialing Liu, Baosheng Lai, Zhangwu Xiao","doi":"10.1016/j.slast.2026.100399","DOIUrl":"10.1016/j.slast.2026.100399","url":null,"abstract":"<p><p>Heart failure (HF) remains a major contributor to global morbidity and mortality, characterized by complex pathological processes including inflammation and aberrant intercellular communication. Shenfu Injection (SFI), a traditional Chinese herbal preparation, shows beneficial clinical outcomes in HF, but the precise molecular basis governing its effects on the cardiac microenvironment is not fully elucidated. We integrated single-cell RNA sequencing (scRNA-seq), bulk transcriptomics, and machine learning to investigate the cellular landscape, intercellular communication networks, and key apoptosis-related genes in HF. Cell-cell interaction analyses were performed to dissect signaling dynamics. The cardioprotective effects of SFI were validated in a murine HF model. scRNA-seq revealed a pro-inflammatory microenvironment characterized by immune cell activation and elevated apoptosis, particularly in fibroblast populations. Cell-cell communication analysis highlighted a dramatic increase in intercellular signaling activity in HF, with pro-inflammatory pathways like MAPK being central to this pathological crosstalk. Through LASSO regression and pathway analysis, LUM (Lumican) was identified as a fibroblast-specific, apoptosis-related hub gene. SFI treatment significantly downregulated LUM expression and the associated p38/p53 pathway, thereby limiting cardiomyocyte apoptosis, reducing inflammatory cytokine levels (TNF-α, IL-6), improving cardiac performance, and alleviating myocardial injury. This study identifies LUM as a critical regulator at the intersection of apoptosis, inflammation, and cellular communication in HF. We demonstrate that SFI exerts its cardioprotective effects by modulating the LUM-mediated signaling axis, thereby disrupting pathological intercellular signaling and mitigating inflammation. These findings offer novel mechanistic insights, positioning the LUM-centric inflammatory communication network as a potential therapeutic target for HF.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100399"},"PeriodicalIF":3.7,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146101037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rapid colorimetric detection of Citrus tristeza virus combining portable sample preparation and reverse transcription-loop mediated isothermal amplification. 便携式样品制备与逆转录环介导等温扩增相结合的柑橘tristeza病毒快速比色检测。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-30 DOI: 10.1016/j.slast.2026.100398
Chia-Wei Liu, Sohrab Bodaghi, Manjunath L Keremane, Brent Kalish, Georgios Vidalakis, Hideaki Tsutsui

The article details combined portable sample preparation and colorimetric detection using loop-mediated isothermal amplification (RT-LAMP) of Citrus tristeza virus (CTV) from citrus leaves. The sample preparation employs an OmniLyse micro-homogenizer and cellulose paper disks to extract and isolate total nucleic acids in less than 15 minutes. Primer and dimethyl sulfoxide (DMSO) concentrations were optimized to minimize RT-LAMP assay reaction times and maximize the delay in the appearance of false positives due to non-specific amplification, respectively. The CTV primers were assessed against a panel of 24 CTV-positive isolates and 6 non-CTV pathogen isolates. To adapt the protocol for cold-chain-free field deployment, a lyophilized RT-LAMP reagent mix was developed and its rehydration solution was optimized to minimize false positives. In a greenhouse setting, the micro-homogenizer successfully extracted and isolated nucleic acids from CTV-positive trees, followed by the lyophilized RT-LAMP assay positively detecting the pathogen within 35 minutes. This study establishes the feasibility of quick and portable CTV detection without access to laboratory equipment, paving the way for larger-scale field studies, comprehensive validation of assay performance, and potential extension to other plant pathogens.

本文详细介绍了利用环介导等温扩增(RT-LAMP)技术对柑橘叶片中柑橘tristeza病毒(CTV)进行便携式样品制备和比色检测的方法。样品制备采用OmniLyse微均质机和纤维素纸盘,在不到15分钟的时间内提取和分离总核酸。引物和二甲基亚砜(DMSO)浓度分别优化,以最大限度地减少RT-LAMP测定的反应时间,最大限度地延迟因非特异性扩增而出现的假阳性。用24株CTV阳性分离株和6株非CTV病原菌分离株对CTV引物进行评估。为了适应无冷链现场部署的方案,开发了一种冻干RT-LAMP试剂混合物,并对其补液溶液进行了优化,以最大限度地减少误报。在温室环境下,微均质机成功地从ctv阳性树木中提取并分离出核酸,随后在35分钟内进行冻干RT-LAMP试验,检测出病原体阳性。本研究建立了无需实验室设备即可快速便携式CTV检测的可行性,为更大规模的现场研究、分析性能的全面验证以及推广到其他植物病原体铺平了道路。
{"title":"Rapid colorimetric detection of Citrus tristeza virus combining portable sample preparation and reverse transcription-loop mediated isothermal amplification.","authors":"Chia-Wei Liu, Sohrab Bodaghi, Manjunath L Keremane, Brent Kalish, Georgios Vidalakis, Hideaki Tsutsui","doi":"10.1016/j.slast.2026.100398","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100398","url":null,"abstract":"<p><p>The article details combined portable sample preparation and colorimetric detection using loop-mediated isothermal amplification (RT-LAMP) of Citrus tristeza virus (CTV) from citrus leaves. The sample preparation employs an OmniLyse micro-homogenizer and cellulose paper disks to extract and isolate total nucleic acids in less than 15 minutes. Primer and dimethyl sulfoxide (DMSO) concentrations were optimized to minimize RT-LAMP assay reaction times and maximize the delay in the appearance of false positives due to non-specific amplification, respectively. The CTV primers were assessed against a panel of 24 CTV-positive isolates and 6 non-CTV pathogen isolates. To adapt the protocol for cold-chain-free field deployment, a lyophilized RT-LAMP reagent mix was developed and its rehydration solution was optimized to minimize false positives. In a greenhouse setting, the micro-homogenizer successfully extracted and isolated nucleic acids from CTV-positive trees, followed by the lyophilized RT-LAMP assay positively detecting the pathogen within 35 minutes. This study establishes the feasibility of quick and portable CTV detection without access to laboratory equipment, paving the way for larger-scale field studies, comprehensive validation of assay performance, and potential extension to other plant pathogens.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100398"},"PeriodicalIF":3.7,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146101007","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Asynchronous batch Bayesian optimization with pipelining evaluations in experimental equipment-limited situations. 实验设备受限条件下流水线评估的异步批处理贝叶斯优化。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-30 DOI: 10.1016/j.slast.2026.100396
Yujin Taguchi, Yusuke Shibuya, Yusuke Hiki, Takashi Morikura, Takahiro G Yamada, Akira Funahashi

Bayesian optimization is efficient even with a small amount of data and is used in engineering and in science, including biology and chemistry. In Bayesian optimization, a parameterized model with an uncertainty is fitted to explain the experimental data, and then the model suggests parameters that would most likely improve the results. Batch Bayesian optimization reduces the processing time of optimization by parallelizing experiments. However, batch Bayesian optimization cannot be applied if the number of parallelized experiments is limited by the cost or scarcity of equipment; in such cases, sequential methods require an unrealistic amount of time. In this study, we developed pipelining Bayesian optimization (PipeBO) to reduce the processing time of optimization even with a limited number of parallel experiments. PipeBO was inspired by the pipelining of central processing unit architecture, which divides computational tasks into multiple processes. PipeBO was designed to achieve experiment parallelization by overlapping various processes of the experiments. PipeBO uses the results of completed experiments to update the parameters of running parallelized experiments. PipeBO was mathematically formulated by modeling experiments as multiple processes with asynchronous result arrival, enabling partial model updates in a pipelined fashion. Using the Black-Box Optimization Benchmarking, which consists of 24 benchmark functions, we compared PipeBO with the sequential Bayesian optimization methods. PipeBO reduced the average processing time of optimization to about 56% for the experiments that consisted of two processes or even less for those with more processes for 20 out of the 24 functions. Overall, PipeBO parallelizes Bayesian optimization in experimental equipment-limited situations so that efficient optimization can be achieved.

贝叶斯优化即使在数据量很小的情况下也很有效,并被用于工程和科学领域,包括生物学和化学。在贝叶斯优化中,首先拟合一个具有不确定性的参数化模型来解释实验数据,然后该模型给出最有可能改善结果的参数。批处理贝叶斯优化通过并行化实验来减少优化的处理时间。然而,如果并行实验的数量受到成本或设备稀缺的限制,则批量贝叶斯优化无法应用;在这种情况下,顺序方法需要大量的时间。在本研究中,我们开发了流水线贝叶斯优化(pipeline Bayesian optimization, PipeBO),即使在并行实验数量有限的情况下,也可以减少优化的处理时间。PipeBO的灵感来自于中央处理器架构的流水线,它将计算任务划分为多个进程。PipeBO的设计目的是通过重叠实验的各个过程来实现实验的并行化。PipeBO使用已完成的实验结果来更新运行并行实验的参数。通过将实验建模为具有异步结果到达的多个进程,PipeBO在数学上进行了表述,从而支持以流水线方式更新部分模型。使用由24个基准函数组成的黑盒优化基准测试,我们将PipeBO与顺序贝叶斯优化方法进行了比较。对于包含两个进程的实验,PipeBO将优化的平均处理时间减少到56%左右,对于包含更多进程的实验,对于24个函数中的20个函数,PipeBO将优化的平均处理时间减少到更少。总体而言,PipeBO在实验设备有限的情况下并行化贝叶斯优化,从而实现高效优化。
{"title":"Asynchronous batch Bayesian optimization with pipelining evaluations in experimental equipment-limited situations.","authors":"Yujin Taguchi, Yusuke Shibuya, Yusuke Hiki, Takashi Morikura, Takahiro G Yamada, Akira Funahashi","doi":"10.1016/j.slast.2026.100396","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100396","url":null,"abstract":"<p><p>Bayesian optimization is efficient even with a small amount of data and is used in engineering and in science, including biology and chemistry. In Bayesian optimization, a parameterized model with an uncertainty is fitted to explain the experimental data, and then the model suggests parameters that would most likely improve the results. Batch Bayesian optimization reduces the processing time of optimization by parallelizing experiments. However, batch Bayesian optimization cannot be applied if the number of parallelized experiments is limited by the cost or scarcity of equipment; in such cases, sequential methods require an unrealistic amount of time. In this study, we developed pipelining Bayesian optimization (PipeBO) to reduce the processing time of optimization even with a limited number of parallel experiments. PipeBO was inspired by the pipelining of central processing unit architecture, which divides computational tasks into multiple processes. PipeBO was designed to achieve experiment parallelization by overlapping various processes of the experiments. PipeBO uses the results of completed experiments to update the parameters of running parallelized experiments. PipeBO was mathematically formulated by modeling experiments as multiple processes with asynchronous result arrival, enabling partial model updates in a pipelined fashion. Using the Black-Box Optimization Benchmarking, which consists of 24 benchmark functions, we compared PipeBO with the sequential Bayesian optimization methods. PipeBO reduced the average processing time of optimization to about 56% for the experiments that consisted of two processes or even less for those with more processes for 20 out of the 24 functions. Overall, PipeBO parallelizes Bayesian optimization in experimental equipment-limited situations so that efficient optimization can be achieved.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100396"},"PeriodicalIF":3.7,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146101077","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring Antibiotic Degradation Mechanisms: Molecular Docking Analysis of Beta-Lactamase Enzymes from Pseudomonas songnenensis. 探索抗生素降解机制:松嫩假单胞菌β -内酰胺酶的分子对接分析。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-25 DOI: 10.1016/j.slast.2026.100397
Pratibha T, Subash Vetri Selvi, Uyen Khanh Pham, Ling Shing Wong, Sinouvassane Djearamane, Jui-Jen Chang, Prakash Balu, Wesley Wei-Wen Hsiao

This study investigates the potential of Pseudomonas songnenensis (P. songnenensis) in degrading β-lactam antibiotics through enzymatic hydrolysis by β-lactamase (β-Lase). Faecal soil samples were collected from ten poultry farms in Tamil Nadu, India, between June and July 2023. Each housing 10,000-50,000 birds and is routinely administered antibiotics. Among the bacterial isolates obtained, strain 18 showed the highest degradation activity. Molecular docking analysis revealed stable enzyme-antibiotic interactions, with Amoxicillin showing the strongest binding affinity due to multiple hydrogen bonds. The β-Lase enzyme effectively hydrolyses the β-lactam ring, breaking the amide bond and rendering antibiotics inactive. This stepwise degradation mechanism contributes to reducing antibiotic persistence in the environment and offers insights into microbial-driven bioremediation strategies. The findings highlight the novelty of using P. songnenensis for antibiotic degradation and emphasise its potential application in mitigating antibiotic pollution in livestock farming and food production systems.

本研究探讨了松嫩假单胞菌(P. songnenensis)通过β-内酰胺酶(β-Lase)水解降解β-内酰胺类抗生素的潜力。在2023年6月至7月期间,从印度泰米尔纳德邦的10个家禽养殖场收集了粪便土壤样本。每个农场都有1万到5万只鸟,并定期使用抗生素。菌株18的降解活性最高。分子对接分析显示,酶与抗生素的相互作用稳定,阿莫西林由于有多个氢键而表现出最强的结合亲和力。β-Lase酶能有效水解β-内酰胺环,破坏酰胺键,使抗生素失去活性。这种逐步降解机制有助于减少抗生素在环境中的持久性,并为微生物驱动的生物修复策略提供见解。这些发现突出了利用P. songnenensis降解抗生素的新颖性,并强调了其在减轻畜牧业和粮食生产系统中的抗生素污染方面的潜在应用。
{"title":"Exploring Antibiotic Degradation Mechanisms: Molecular Docking Analysis of Beta-Lactamase Enzymes from Pseudomonas songnenensis.","authors":"Pratibha T, Subash Vetri Selvi, Uyen Khanh Pham, Ling Shing Wong, Sinouvassane Djearamane, Jui-Jen Chang, Prakash Balu, Wesley Wei-Wen Hsiao","doi":"10.1016/j.slast.2026.100397","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100397","url":null,"abstract":"<p><p>This study investigates the potential of Pseudomonas songnenensis (P. songnenensis) in degrading β-lactam antibiotics through enzymatic hydrolysis by β-lactamase (β-Lase). Faecal soil samples were collected from ten poultry farms in Tamil Nadu, India, between June and July 2023. Each housing 10,000-50,000 birds and is routinely administered antibiotics. Among the bacterial isolates obtained, strain 18 showed the highest degradation activity. Molecular docking analysis revealed stable enzyme-antibiotic interactions, with Amoxicillin showing the strongest binding affinity due to multiple hydrogen bonds. The β-Lase enzyme effectively hydrolyses the β-lactam ring, breaking the amide bond and rendering antibiotics inactive. This stepwise degradation mechanism contributes to reducing antibiotic persistence in the environment and offers insights into microbial-driven bioremediation strategies. The findings highlight the novelty of using P. songnenensis for antibiotic degradation and emphasise its potential application in mitigating antibiotic pollution in livestock farming and food production systems.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100397"},"PeriodicalIF":3.7,"publicationDate":"2026-01-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146068663","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An Integrated Deep Learning Framework Leveraging NASNet and Vision Transformer with MixProcessing for Accurate and Precise Diagnosis of Lung Diseases. 基于混合处理的NASNet和视觉转换器集成深度学习框架用于肺部疾病的准确诊断。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-22 DOI: 10.1016/j.slast.2026.100394
Sajjad Saleem, Muhammad Zaheer Sajid, Abida Sharif, Jarrar Amjad, Anwaar UlHaq, Haya Aldossary

Lung diseases such as pneumonia, tuberculosis, COVID-19, and lung cancer remain significant global health challenges that demand rapid and accurate diagnosis to improve patient outcomes. This study proposes NASNet-ViT, a novel deep learning framework that integrates the powerful convolutional feature extraction of NASNet with the global attention mechanisms of the Vision Transformer (ViT). To enhance diagnostic precision, a multi-stage preprocessing pipeline, termed MixProcessing, is introduced, combining wavelet transform decomposition, adaptive histogram equalization, and morphological filtering to improve image quality and feature clarity. The proposed NASNet-ViT model classifies lung images into five categories, normal, lung cancer, COVID-19, pneumonia, and tuberculosis achieving outstanding performance metrics: 98.9% accuracy, 0.99 sensitivity, 0.989 F1-score, and 0.987 specificity. Compared to established architectures such as MixNet-LD, D-ResNet, MobileNet, and ResNet50, NASNet-ViT demonstrates superior accuracy while maintaining a lightweight model size of only 25.6 MB and fast inference time of 12.4 seconds, making it practical for deployment in real-time, resource-constrained clinical environments. This research advances the field of medical image analysis by offering a robust and scalable AI solution capable of supporting clinicians in timely and precise lung disease diagnosis.

肺炎、结核病、COVID-19和肺癌等肺部疾病仍然是重大的全球卫生挑战,需要快速准确的诊断,以改善患者的治疗结果。本研究提出了一种新的深度学习框架NASNet-ViT,它将NASNet强大的卷积特征提取与视觉转换器(Vision Transformer, ViT)的全局注意机制相结合。为了提高诊断精度,引入了一种称为MixProcessing的多级预处理管道,结合小波变换分解、自适应直方图均衡化和形态滤波来提高图像质量和特征清晰度。所提出的NASNet-ViT模型将肺部图像分为五类:正常、肺癌、COVID-19、肺炎和结核病,获得了出色的性能指标:98.9%的准确率、0.99的灵敏度、0.989的f1评分和0.987的特异性。与MixNet-LD、D-ResNet、MobileNet和ResNet50等现有架构相比,NASNet-ViT在保持轻量级模型大小仅为25.6 MB和快速推理时间12.4秒的同时,具有卓越的准确性,使其在实时、资源受限的临床环境中部署更加实用。这项研究提供了一个强大的、可扩展的人工智能解决方案,能够支持临床医生及时、准确地诊断肺部疾病,从而推动了医学图像分析领域的发展。
{"title":"An Integrated Deep Learning Framework Leveraging NASNet and Vision Transformer with MixProcessing for Accurate and Precise Diagnosis of Lung Diseases.","authors":"Sajjad Saleem, Muhammad Zaheer Sajid, Abida Sharif, Jarrar Amjad, Anwaar UlHaq, Haya Aldossary","doi":"10.1016/j.slast.2026.100394","DOIUrl":"https://doi.org/10.1016/j.slast.2026.100394","url":null,"abstract":"<p><p>Lung diseases such as pneumonia, tuberculosis, COVID-19, and lung cancer remain significant global health challenges that demand rapid and accurate diagnosis to improve patient outcomes. This study proposes NASNet-ViT, a novel deep learning framework that integrates the powerful convolutional feature extraction of NASNet with the global attention mechanisms of the Vision Transformer (ViT). To enhance diagnostic precision, a multi-stage preprocessing pipeline, termed MixProcessing, is introduced, combining wavelet transform decomposition, adaptive histogram equalization, and morphological filtering to improve image quality and feature clarity. The proposed NASNet-ViT model classifies lung images into five categories, normal, lung cancer, COVID-19, pneumonia, and tuberculosis achieving outstanding performance metrics: 98.9% accuracy, 0.99 sensitivity, 0.989 F1-score, and 0.987 specificity. Compared to established architectures such as MixNet-LD, D-ResNet, MobileNet, and ResNet50, NASNet-ViT demonstrates superior accuracy while maintaining a lightweight model size of only 25.6 MB and fast inference time of 12.4 seconds, making it practical for deployment in real-time, resource-constrained clinical environments. This research advances the field of medical image analysis by offering a robust and scalable AI solution capable of supporting clinicians in timely and precise lung disease diagnosis.</p>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":" ","pages":"100394"},"PeriodicalIF":3.7,"publicationDate":"2026-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146044362","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrative single‑cell multi‑omics network analysis to elucidate epigenetic regulation in neurodevelopmental disorders 综合单细胞多组学网络分析阐明神经发育障碍的表观遗传调控。
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-22 DOI: 10.1016/j.slast.2026.100395
Amal Alshardan , Yazeed Alashban , Mohammed Alahmadi , Adel Albshri , Rakan Alanazi , Hanadi Alkhudhayr , Nujud Aloshban , Monir Abdullah
Neurodevelopmental disorders (NDDs) arise from disruptions in molecular programs that guide early brain formation, yet the specific epigenetic and transcriptional mechanisms underlying these conditions remain poorly defined. Recent advances in single-cell technologies allow parallel profiling of gene expression, chromatin accessibility, and DNA methylation within individual cells; however, most existing studies remain unimodal and therefore unable to resolve convergent dysregulation across molecular layers. This study presents an integrative single-cell multi-omics framework that combines scRNA-seq, scATAC-seq, and single-cell DNA methylation data from developing human and mouse brain tissue, as well as patient-derived neural progenitor models. By applying canonical correlation analysis, manifold alignment, latent-variable modeling, and network inference, we construct cell-type-specific epigenetic regulatory networks and quantify how chromatin accessibility, methylation state, and transcriptional output collectively deviate in NDD-relevant cell populations. Our analyses reveal that neural progenitors and excitatory neurons exhibit the strongest multimodal alterations, characterized by promoter hypermethylation, loss of enhancer accessibility, and downregulation of neurogenic and synaptic pathways. Integrative network modeling identifies SOX11 and CHD8 as central, multi-layer master regulators whose disrupted activity contributes to aberrant lineage specification. Quantitative evaluation of the Single-Cell Multi-Omics Network demonstrates high enhancer–gene linkage accuracy, consistent cross-species regulatory conservation, and efficient regulatory module reconstruction. Collectively, this integrative approach provides a unified view of epigenetic and transcriptional dysregulation in NDDs, generating mechanistic hypotheses with potential implications for biomarker discovery and targeted therapeutic intervention.
神经发育障碍(ndd)是由指导早期大脑形成的分子程序中断引起的,但这些疾病背后的具体表观遗传和转录机制仍不清楚。单细胞技术的最新进展允许在单个细胞内平行分析基因表达、染色质可及性和DNA甲基化;然而,大多数现有的研究仍然是单峰的,因此无法解决跨分子层的趋同失调。本研究提出了一个整合的单细胞多组学框架,该框架结合了来自发育中的人和小鼠脑组织的scRNA-seq、scATAC-seq和单细胞DNA甲基化数据,以及患者来源的神经祖细胞模型。通过应用典型相关分析、流形校准、潜在变量建模和网络推断,我们构建了细胞类型特异性的表观遗传调控网络,并量化了ndd相关细胞群体中染色质可及性、甲基化状态和转录输出如何集体偏离。我们的分析表明,神经祖细胞和兴奋性神经元表现出最强的多模态改变,其特征是启动子超甲基化,增强子可及性丧失,神经源性和突触通路下调。综合网络模型确定SOX11和CHD8是中心的、多层的主调控因子,其被破坏的活动导致了异常的谱系规范。单细胞多组学网络的定量评估表明,增强基因链接的准确性高,跨物种调控的一致性和高效的调控模块重建。总的来说,这种综合方法为ndd的表观遗传和转录失调提供了统一的观点,产生了对生物标志物发现和靶向治疗干预具有潜在意义的机制假设。
{"title":"Integrative single‑cell multi‑omics network analysis to elucidate epigenetic regulation in neurodevelopmental disorders","authors":"Amal Alshardan ,&nbsp;Yazeed Alashban ,&nbsp;Mohammed Alahmadi ,&nbsp;Adel Albshri ,&nbsp;Rakan Alanazi ,&nbsp;Hanadi Alkhudhayr ,&nbsp;Nujud Aloshban ,&nbsp;Monir Abdullah","doi":"10.1016/j.slast.2026.100395","DOIUrl":"10.1016/j.slast.2026.100395","url":null,"abstract":"<div><div>Neurodevelopmental disorders (NDDs) arise from disruptions in molecular programs that guide early brain formation, yet the specific epigenetic and transcriptional mechanisms underlying these conditions remain poorly defined. Recent advances in single-cell technologies allow parallel profiling of gene expression, chromatin accessibility, and DNA methylation within individual cells; however, most existing studies remain unimodal and therefore unable to resolve convergent dysregulation across molecular layers. This study presents an integrative single-cell multi-omics framework that combines scRNA-seq, scATAC-seq, and single-cell DNA methylation data from developing human and mouse brain tissue, as well as patient-derived neural progenitor models. By applying canonical correlation analysis, manifold alignment, latent-variable modeling, and network inference, we construct cell-type-specific epigenetic regulatory networks and quantify how chromatin accessibility, methylation state, and transcriptional output collectively deviate in NDD-relevant cell populations. Our analyses reveal that neural progenitors and excitatory neurons exhibit the strongest multimodal alterations, characterized by promoter hypermethylation, loss of enhancer accessibility, and downregulation of neurogenic and synaptic pathways. Integrative network modeling identifies SOX11 and CHD8 as central, multi-layer master regulators whose disrupted activity contributes to aberrant lineage specification. Quantitative evaluation of the Single-Cell Multi-Omics Network demonstrates high enhancer–gene linkage accuracy, consistent cross-species regulatory conservation, and efficient regulatory module reconstruction. Collectively, this integrative approach provides a unified view of epigenetic and transcriptional dysregulation in NDDs, generating mechanistic hypotheses with potential implications for biomarker discovery and targeted therapeutic intervention.</div></div>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":"37 ","pages":"Article 100395"},"PeriodicalIF":3.7,"publicationDate":"2026-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146044385","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mechanism study on promoting podocyte injury by regulating ATPA1 and PARK2 mediated mitochondrial dysfunction: Immunofluorescence image analysis 调节ATPA1和PARK2介导的线粒体功能障碍促进足细胞损伤的机制研究:免疫荧光图像分析
IF 3.7 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-21 DOI: 10.1016/j.slast.2026.100391
Yanqin Huang , Yuqian Lin , Wurui Guo , Haiping Huang , Haiting Huang , Peng Huang , Xu Lin
'HSP90AB1 protein macromolecule plays an important role in various cellular stress responses, but its specific mechanism in podiatocyte injury and mitochondrial dysfunction remains unclear. The aim of this study was to investigate the mechanism of how 'HSP90AB1 mediates mitochondrial dysfunction and leads to podiocyte injury through regulation of ATP5A1 and PARK2. Clinical podocyte samples were collected and the MPC5 mouse podocyte cell line was used for experiments. The interaction of 'HSP90AB1 with ATP5A1 and PARK2 was analyzed by transcriptome sequencing, cell culture, 'HSP90AB1 overexpression and knockdown construction, combined immunoprecipitation (CoIP) and immunofluorescence detection. CCK8 was used to measure cell viability, Westernblot and qPCR were used to assess protein and mRNA expression levels, and statistical methods were used to analyze the data. Bioinformatics analysis revealed physical or functional interactions between 'HSP90AB1, ATP5A1, and PARK2 proteins. The interaction between 'HSP90AB1 and these two proteins was verified by cell experiments, and 'HSP90AB1 played an important role in podiatocyte injury. In ADR-induced podocyte injury model, mRNA and protein expressions of 'HSP90AB1, ATP5A1 and PARK2 were significantly changed, and the expression of mitochondrial autophagy related proteins was also changed. Further analysis showed that the interaction between 'HSP90AB1, ATP5A1 and PARK2 played a key role in the process of podiocyte injury. This study revealed that 'HSP90AB1 mediates mitochondrial dysfunction by regulating the interaction of ATP5A1 and PARK2, thereby promoting podiocyte injury. This discovery provides new potential targets for the treatment of podocyte injury and contributes to the understanding of the pathological mechanisms of related diseases.
HSP90AB1蛋白大分子在各种细胞应激反应中发挥重要作用,但其在足细胞损伤和线粒体功能障碍中的具体机制尚不清楚。本研究旨在探讨HSP90AB1如何通过调节ATP5A1和PARK2介导线粒体功能障碍并导致足细胞损伤的机制。收集临床足细胞样本,采用MPC5小鼠足细胞细胞系进行实验。通过转录组测序、细胞培养、HSP90AB1过表达和敲低构建、联合免疫沉淀(CoIP)和免疫荧光检测分析HSP90AB1与ATP5A1和PARK2的相互作用。采用CCK8检测细胞活力,采用Westernblot和qPCR检测蛋白和mRNA表达水平,并采用统计学方法分析数据。生物信息学分析显示HSP90AB1、ATP5A1和PARK2蛋白之间存在物理或功能上的相互作用。细胞实验证实了HSP90AB1与这两种蛋白的相互作用,HSP90AB1在足细胞损伤中发挥了重要作用。在adr诱导足细胞损伤模型中,HSP90AB1、ATP5A1和PARK2 mRNA和蛋白表达均发生了显著变化,线粒体自噬相关蛋白表达也发生了变化。进一步分析发现,HSP90AB1、ATP5A1和PARK2的相互作用在足细胞损伤过程中发挥了关键作用。本研究发现HSP90AB1通过调节ATP5A1和PARK2的相互作用介导线粒体功能障碍,从而促进足细胞损伤。这一发现为足细胞损伤的治疗提供了新的潜在靶点,并有助于了解相关疾病的病理机制。
{"title":"Mechanism study on promoting podocyte injury by regulating ATPA1 and PARK2 mediated mitochondrial dysfunction: Immunofluorescence image analysis","authors":"Yanqin Huang ,&nbsp;Yuqian Lin ,&nbsp;Wurui Guo ,&nbsp;Haiping Huang ,&nbsp;Haiting Huang ,&nbsp;Peng Huang ,&nbsp;Xu Lin","doi":"10.1016/j.slast.2026.100391","DOIUrl":"10.1016/j.slast.2026.100391","url":null,"abstract":"<div><div>'HSP90AB1 protein macromolecule plays an important role in various cellular stress responses, but its specific mechanism in podiatocyte injury and mitochondrial dysfunction remains unclear. The aim of this study was to investigate the mechanism of how 'HSP90AB1 mediates mitochondrial dysfunction and leads to podiocyte injury through regulation of ATP5A1 and PARK2. Clinical podocyte samples were collected and the MPC5 mouse podocyte cell line was used for experiments. The interaction of 'HSP90AB1 with ATP5A1 and PARK2 was analyzed by transcriptome sequencing, cell culture, 'HSP90AB1 overexpression and knockdown construction, combined immunoprecipitation (CoIP) and immunofluorescence detection. CCK8 was used to measure cell viability, Westernblot and qPCR were used to assess protein and mRNA expression levels, and statistical methods were used to analyze the data. Bioinformatics analysis revealed physical or functional interactions between 'HSP90AB1, ATP5A1, and PARK2 proteins. The interaction between 'HSP90AB1 and these two proteins was verified by cell experiments, and 'HSP90AB1 played an important role in podiatocyte injury. In ADR-induced podocyte injury model, mRNA and protein expressions of 'HSP90AB1, ATP5A1 and PARK2 were significantly changed, and the expression of mitochondrial autophagy related proteins was also changed. Further analysis showed that the interaction between 'HSP90AB1, ATP5A1 and PARK2 played a key role in the process of podiocyte injury. This study revealed that 'HSP90AB1 mediates mitochondrial dysfunction by regulating the interaction of ATP5A1 and PARK2, thereby promoting podiocyte injury. This discovery provides new potential targets for the treatment of podocyte injury and contributes to the understanding of the pathological mechanisms of related diseases.</div></div>","PeriodicalId":54248,"journal":{"name":"SLAS Technology","volume":"37 ","pages":"Article 100391"},"PeriodicalIF":3.7,"publicationDate":"2026-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146039878","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
SLAS Technology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1