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Model-based interactive visualization for complex systems requirements and design in joint tests. 联合测试中复杂系统需求与设计的基于模型的交互式可视化。
IF 2.5 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-01 Epub Date: 2024-12-14 DOI: 10.1016/j.slast.2024.100231
Chao Sun, Ruo Wu Wu, Si Yuan Liu

This study presents an interactive visualization-based Model-Based Systems Engineering (MBSE) technique that is especially designed to handle requirements analysis and design issues in joint test settings. Standardized operational requirement description, test requirement analysis, test design, and first test system plan generation are the four primary phases that make up the technique. This method provides a more thorough and approachable depiction of both operational and test requirements by utilizing interactive visualization techniques. This makes it possible for test staff to more accurately and efficiently develop, visualize, and improve test plans. The methodology's efficacy in augmenting the capabilities of joint testing platforms is demonstrated through a thorough case study of a joint test. Higher levels of accuracy and dependability in test results are eventually a result of this approach's strong support for requirements analysis, test design, and the general execution and assessment of joint tests inside complex systems.

本研究提出了一种基于交互式可视化的基于模型的系统工程(MBSE)技术,该技术专门用于处理联合测试环境中的需求分析和设计问题。标准化的操作需求描述、测试需求分析、测试设计和第一个测试系统计划生成是构成该技术的四个主要阶段。这种方法通过利用交互式可视化技术,为操作和测试需求提供了更彻底、更容易接近的描述。这使得测试人员能够更准确、更有效地开发、可视化和改进测试计划。该方法在增强联合测试平台能力方面的有效性通过对联合测试的全面案例研究得到了证明。测试结果中更高级别的准确性和可靠性最终是该方法对需求分析、测试设计以及复杂系统内联合测试的一般执行和评估的强有力支持的结果。
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引用次数: 0
Implementing enclosed sterile integrated robotic platforms to improve cell-based screening for drug discovery. 实施封闭式无菌集成机器人平台以改进基于细胞的药物发现筛选。
IF 2.5 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-01 Epub Date: 2024-12-05 DOI: 10.1016/j.slast.2024.100230
Alice Rockliffe, Lauren Wheeler, Kiran Lidhar, Arun Dhar, Michelle Pemberton, Richard Kasprowicz, Ceridwen Hopely, Jo Francis, Shane Marine, David Brierley, Lorna Suckling

At GSK, we have implemented custom integrated robotics platforms housed in bespoke biosafety enclosures to augment our capabilities in advanced cellular screening. Here we present and discuss the impact of one such system, the Cellular Automated Screening Platform (CASPer). We evaluate the benefits of implementing specific processes on CASPer that include increasing the throughput of safety screening assays and improving data integrity when testing complex in vitro 3D primary human hepatocyte models. This article provides an overview of the platforms installed and offers insight into their utilisation by presenting example workflows and quality control solutions which have been implemented. We offer perspective on the advantages of such custom integrated systems and their limitations in cellular screening for early drug discovery.

在GSK,我们已经实施了定制的集成机器人平台,安装在定制的生物安全外壳中,以增强我们在高级细胞筛选方面的能力。在这里,我们提出并讨论了一个这样的系统,细胞自动筛选平台(CASPer)的影响。我们评估了在CASPer上实施特定流程的好处,包括增加安全性筛选分析的吞吐量,并在测试复杂的体外3d原代人肝细胞模型时提高数据完整性。本文概述了已安装的平台,并通过展示已实现的示例工作流和质量控制解决方案,深入了解了它们的使用情况。我们提供的观点,这种定制集成系统的优势和局限性,在细胞筛选早期药物发现。
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引用次数: 0
The influence of vaginal microbiota on the pregnancy outcome of artificial insemination with husband's sperm based on microscope images combined with PCR fluorescence method. 基于显微镜图像结合PCR荧光法观察阴道微生物群对丈夫精子人工授精妊娠结局的影响。
IF 2.5 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-01 Epub Date: 2024-12-24 DOI: 10.1016/j.slast.2024.100242
Yanling Xing, Wei Wang, Na Wan, Dongmei Zhang, Mei Shan, Guan Wang

The vaginal microbiota plays an important role in reproductive health, especially in the process of artificial insemination. The imbalance of microbiota may affect pregnancy outcomes. Therefore, this study aims to explore the composition of vaginal microbiota and its impact on artificial insemination pregnancy outcomes, combined with microscopic images and PCR fluorescence methods, in order to provide scientific basis for improving the pregnancy outcomes of husband sperm artificial insemination. This study included female patients who underwent artificial insemination with husband's sperm and collected reproductive tract samples. By observing the microbial community morphology in the sample under a microscope and analyzing microbial DNA using PCR fluorescence method, the microbial ecological status is evaluated. Among women with successful pregnancy, the proportion of beneficial bacteria (such as lactic acid bacteria) is higher, while the abundance of pathogenic bacteria is significantly reduced. Specific microbial markers detected by PCR fluorescence method are positively correlated with pregnancy rate. Therefore, the microecological state of the female reproductive tract has a significant impact on the pregnancy outcome of artificial insemination. Maintaining a good microecological balance, especially increasing the proportion of beneficial bacteria, can help improve the success rate of artificial insemination.

阴道微生物群在生殖健康,特别是人工授精过程中起着重要的作用。微生物群失衡可能影响妊娠结局。因此,本研究旨在结合显微镜图像和PCR荧光法,探讨阴道微生物群的组成及其对人工授精妊娠结局的影响,以期为改善丈夫精子人工授精妊娠结局提供科学依据。本研究包括用丈夫的精子进行人工授精并收集生殖道样本的女性患者。通过显微镜下观察样品中微生物群落形态,PCR荧光法分析微生物DNA,评价微生物生态状况。在怀孕成功的女性中,有益菌(如乳酸菌)的比例较高,而致病菌的丰度明显降低。PCR荧光法检测特异性微生物标志物与妊娠率呈正相关。因此,女性生殖道微生态状态对人工授精妊娠结局有显著影响。保持良好的微生态平衡,特别是增加有益菌的比例,有助于提高人工授精成功率。
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引用次数: 0
Advanced surface-enhanced raman scattering nanoprobes for precise detection of Nitroreductase in Hypoxic tumor cells: Improving Cancer diagnosis. 先进的表面增强拉曼散射纳米探针用于缺氧肿瘤细胞中硝基还原酶的精确检测:提高癌症诊断。
IF 2.5 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-01 Epub Date: 2024-12-03 DOI: 10.1016/j.slast.2024.100229
Xiaoyue Zhao, Ying Zhang, Chunyan Zhu, Zhihui Yang, Xiaoyuan Chu

Nitroreductase (NTR) plays a critical role in the oxygen-deficient environment of anoxic tumor cells, and its identification is crucial for the diagnosis and treatment of cancer. This research introduces an innovative Surface Enhanced Raman Scattering (SERS) probe, created by attaching p-nitrothiophenol (p-NTP) to gold nanoparticles (Au NPs). This probe leverages the specific enzymatic reaction of NTR in hypoxic status, utilizing decreased NADH. The enzymatic activity of NTR transforms nitroaromatic compounds into aromatic amines, which is then reflected as a measurable shift in the SERS signal of the probe. This novel approach allows for the accurate quantification of NTR, with the sensitivity reaching a detection threshold of less than 0.02 μg/mL. The probe's non-toxic nature and superior biocompatibility facilitate its use for direct SERS investigations in A549 cells under reduced oxygen levels. We also applied this method to xenograft model. The results demonstrate a marked increase in NTR levels in tumor cells and tumor tissues in hypoxic conditions, highlighting the significance of this nanoprobe in enhancing cancer diagnostics, helping medical doctors making treatment decisions more swiftly and effectively.

硝基还原酶(Nitroreductase, NTR)在缺氧肿瘤细胞的缺氧环境中起着至关重要的作用,其鉴定对肿瘤的诊断和治疗至关重要。本研究介绍了一种创新的表面增强拉曼散射(SERS)探针,该探针将对硝基苯酚(p-NTP)附着在金纳米颗粒(Au NPs)上。该探针利用缺氧状态下NTR的特异性酶促反应,利用减少的NADH。NTR的酶活性将硝基芳香族化合物转化为芳香胺,然后在探针的SERS信号中反映为可测量的位移。这种新方法可以准确定量NTR,灵敏度达到小于0.02 μg/mL的检测阈值。该探针的无毒性和优越的生物相容性有助于其在低氧水平下用于A549细胞的直接SERS研究。我们还将这种方法应用于异种移植模型。结果表明,在缺氧条件下,肿瘤细胞和肿瘤组织中的NTR水平显著增加,突出了这种纳米探针在增强癌症诊断方面的重要性,帮助医生更迅速有效地做出治疗决策。
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引用次数: 0
How to convert a 3D printer to a personal automated liquid handler for life science workflows. 如何将3D打印机转换为生命科学工作流程的个人自动液体处理器。
IF 2.5 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-01 Epub Date: 2024-12-26 DOI: 10.1016/j.slast.2024.100239
Dulguunnaran Naranbat, Benjamin Phelps, John Murphy, Anubhav Tripathi

Automated liquid handlers are fundamental in modern life science laboratories, yet their high costs and large footprints often limit accessibility for smaller labs. This study presents an innovative approach to decentralizing a liquid handling system by converting a low-cost 3D printer into a customizable and accurate liquid handler. The Personal Automated Liquid Handler (PALH) system, costing ∼$400, incorporates a single-channel pipet, custom 3D-printed components, and open-source software for personalized workflows, allowing researchers to build and modify the system for specific experimental needs. The PALH system was evaluated through common life science assays, including preparing real-time PCR samples, end-point PCR with novel pipet-based downstream purification, and genomic DNA extraction from peripheral whole blood. In real-time PCR experiments targeting the YWHAZ gene, the PALH system demonstrated comparable performance to manual preparation across DNA quantities (1 pg to 100 ng). For end-point PCR, the PALH successfully amplified and purified 204 bp and 406 bp amplicons from a pUC19 vector, yielding concentrations similar to manual methods (5.43 ± 0.85 ng/µL vs. 2.10 ± 0.16 ng/µL for 204 bp; 3.74 ± 2.13 ng/µL vs. 1.51 ± 0.15 ng/µL for 406 bp, respectively). In genomic DNA extraction from whole blood, the PALH system achieved comparable DNA yields to manual extraction (49.52 ± 3.13 ng/µL vs. 48.62 ± 5.9 ng/µL), although at higher purity (260/280 ratio of 1.83 ± 0.07 vs. 1.92 ± 0.03), although both are at acceptable ranges. The open-source nature of the PALH system hopefully encourages further community-driven improvements and protocol sharing, fostering innovation and collaboration within the scientific community. As laboratory automation advances, the PALH system could be crucial in democratizing access to high-quality automated liquid handling, particularly in resource-limited settings.

自动化液体处理器是现代生命科学实验室的基础,但它们的高成本和大足迹往往限制了小型实验室的可及性。本研究提出了一种创新的方法,通过将低成本的3D打印机转换为可定制的精确液体处理器,来分散液体处理系统。个人自动化液体处理(PALH)系统,成本约400美元,包含单通道移液器,定制3d打印组件和用于个性化工作流程的开源软件,允许研究人员构建和修改系统以满足特定的实验需求。PALH系统通过常见的生命科学实验进行评估,包括制备实时PCR样品,采用新型移液管下游纯化的终点PCR,以及从外周血全血中提取基因组DNA。在针对YWHAZ基因的实时PCR实验中,PALH系统在DNA数量(1 pg至100 ng)上表现出与人工制备相当的性能。对于终点PCR, PALH成功地从pUC19载体上扩增和纯化了204 bp和406 bp的扩增子,得到的浓度与手工方法相似(5.43±0.85 ng/µL vs. 2.10±0.16 ng/µL);分别为3.74±2.13 ng/µL和1.51±0.15 ng/µL (406 bp)。在全血基因组DNA提取中,PALH系统的DNA产率与人工提取相当(49.52±3.13 ng/µL vs. 48.62±5.9 ng/µL),尽管纯度更高(260/280比值为1.83±0.07 vs. 1.92±0.03),尽管两者都在可接受的范围内。PALH系统的开源特性有望鼓励进一步的社区驱动的改进和协议共享,促进科学界的创新和合作。随着实验室自动化的进步,PALH系统对于实现高质量自动化液体处理的民主化至关重要,特别是在资源有限的环境中。
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引用次数: 0
Early Detection of Bronchopulmonary Dysplasia (BPD) in Preterm Infants Using Doppler Ultrasound Technology.
IF 2.5 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-30 DOI: 10.1016/j.slast.2025.100249
Pin Wang, Lihong Duan, Congxin Sun, Yu Chen, Yanyan Peng, Guihong Chen, Lixia Wu, Yan Li

Objective: The purpose of this research is to determine if Doppler ultrasonography technology may be used to forecast the onset of bronchopulmonary dysplasia (BPD) in premature babies in the early postnatal stage.

Methods: On days 3, 7, 14, and 28 after delivery, Doppler ultrasonography exams were performed on a prospective cohort of 170 preterm newborns. Measurements were made of parameters such right ventricular output (RVO), systolic-to-diastolic ratio (S/D ratio), pulmonary artery acceleration time (PAAT), and velocity time integral (VTI). The predictive value of these indicators was evaluated using Kaplan-Meier survival analysis and multivariate logistic regression.

Results: The severity of BPD was substantially correlated with all assessed Doppler ultrasound parameters (P<0.05). With an area under the curve (AUC) of 0.76, PAAT in particular demonstrated a reasonable capacity for prediction. A considerably greater cumulative incidence was found by Kaplan-Meier survival analysis.

Conclusion: In conclusion, Doppler ultrasonography technology is a useful technique for identifying BPD in premature babies early on. High-risk babies can be efficiently identified by PAAT and VTI in particular, allowing for prompt intervention and possibly better results.

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引用次数: 0
Fully Automated Extraction of High-Quality total Nucleic Acids from FFPE specimens for Comprehensive Genomic Profiling of solid Tumors.
IF 2.5 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-30 DOI: 10.1016/j.slast.2025.100252
Kristopher Amirault, Michael Collins, Luca Beker, Brandon Mills, Martina Werner, Jonathan Andreas, Daniel Hartman, Jordan Dargert, Vanessa Process, Sean Cederlund, Thuy Dao, Linnea Menin, Molly Ferrara, Andrew Briggs, Joshua Shreve, Daniel Metzger, Angela Stout, Erin Deblasi, Jie An, Taylor Jensen, Shengle Zhang, Vinesh Rana, Bryn Burlingame, Ulrich Thomann, Durga Prasad Dash, Sha Liao, Jeffrey M Conroy, Eugenio Daviso

Comprehensive Genomic Profiling (CGP) has emerged as a progressive standard of care for the understanding clinical oncology and treatment of solid tumors (Conroy, Pabla et al. 2021). By identifying actionable mutations through next-generation sequencing of solid tumors CGP enables targeted therapy decisions. Formalin-fixed paraffin-embedded tissues are notoriously difficult samples in respect to reliably extracting high-quality nucleic acids and sufficient genetic material to meet sequencing input requirements. In this work we present an automated solution for upstream sample processing of solid tumors to enable high throughput and scalable CGP workflows by eliminating bottlenecks and enhancing results. The Sonication STAR automated DNA and RNA methods from FFPE Tissues was created as a collaboration between Hamilton Company, Covaris, and Labcorp and it offers the potential reduction in quantity not sufficient (QNS) samples and sequencing performance improvements resulting in a 16% increase in fully reported tumor profiles for patients. This automated approach offers potential saving in workflow costs, improved efficiency, and a reduction in re-extraction and re-sequencing of tumors.

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引用次数: 0
Life Sciences Discovery and Technology Highlights.
IF 2.5 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-24 DOI: 10.1016/j.slast.2025.100248
Jamien Lim, Tal Murthy
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引用次数: 0
Clinical Observation of VR Virtual Reality Rehabilitation Training Combined with Acupuncture in the Treatment of Mild Cognitive Impairment.
IF 2.5 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-23 DOI: 10.1016/j.slast.2025.100250
Ying Fu, Hui Wang

Mild cognitive impairment (MCI) is an intermediate state between normal aging and dementia, and its symptoms include easy forgetting, distraction, and mental deterioration. This directly affects the patient's motor function, daily living ability, and social adaptability, and brings many difficulties to the patient's reintegration into society. Therefore, clinical research on MCI is very necessary. The purpose of this paper is to study the efficacy of acupuncture and moxibustion in the treatment of MCI based on VR virtual reality technology. This paper firstly expounds the application prospect of VR virtual reality rehabilitation training and virtual scene intervention in MCI patients. It then introduces the characteristics of acupuncture and the acupuncture points of scalp acupuncture and eye acupuncture. This paper then establishes the algorithm model of the VR virtual reality rehabilitation training system, which lays a solid foundation for the design of the subsequent rehabilitation training system. This paper then conducts clinical experiments and analysis on the treatment of mild cognitive impairment, which establishes a treatment group and a control group for comparative experiments. The experimental results showed that the combined effect size OR=2.74 of the meta-analysis, the combined effect size test statistic Z=3.38, WMD=2.42, and the 95% CI was (1.98, 3.06). It indicated that the treatment group had better efficacy. The MMSE score and MoCA score of the treatment group after treatment and training increased by 28.68% and 15.36%, respectively, and the scores were higher than those of the control group. Therefore, the use of VR virtual reality technology combined with acupuncture is of great significance for the rehabilitation and treatment of patients with mild cognitive impairment.

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引用次数: 0
Study on the quality of drug vial recognition and grasping and opening for pharmacy intravenous admixture robot based on nanophotonic sensing. 基于纳米光子传感的静脉输液机器人药瓶质量识别及抓取打开研究。
IF 2.5 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-18 DOI: 10.1016/j.slast.2025.100244
Li Guochun, Ye Jiandong, Zhao Huaibi, Xu Hong, Jin Haiyang, Huang Xinwu, Deng Gulin

With the continuous progress of medical technology, traditional medicine bottle identification and management methods have problems such as low efficiency and large errors, and innovative solutions are urgently needed. Due to its high sensitivity and rapid response characteristics, this study aims to develop a robot system for intravenous infusion based on nanophotonics sensing to realize accurate identification, grasping and opening of medicine bottles in a dynamic environment, so as to improve the safety and efficiency of intravenous infusion. In this paper, an intelligent robot system with nanophotonics sensor is designed, which uses nanomaterials to produce high sensitivity sensor, so as to realize the information recognition of medicine bottle labels. The robot arm is set up to grasp and open the medicine bottle automatically through visual recognition system and feedback control algorithm. We conducted several rounds of experiments in a simulated environment to evaluate the recognition rate, grab success rate, and opening speed of the system. The experimental results show that the recognition system based on nano photonic sensor in bottle of accuracy and grab the success rate is higher, open time is greatly shortened, compared with traditional methods, the new system in recognition and operation were showed a significant advantage. The study demonstrates the potential of nanophotonics sensing technology in intravenous infusion robots. By optimizing the process of bottle recognition, grasping and opening, the system not only improves the safety and efficiency of medical operations, but is also expected to play a role in future medical automation. Future work will focus on further perfecting the system integration and optimization algorithm, so as to adapt to more complex clinical environment.

随着医疗技术的不断进步,传统的药瓶识别和管理方法存在效率低、误差大等问题,急需创新的解决方案。由于其高灵敏度和快速响应的特点,本研究旨在开发一种基于纳米光子传感的静脉输液机器人系统,实现动态环境下药瓶的准确识别、抓取和打开,从而提高静脉输液的安全性和效率。本文设计了一种具有纳米光子传感器的智能机器人系统,利用纳米材料制作高灵敏度传感器,实现药瓶标签的信息识别。通过视觉识别系统和反馈控制算法,设置机械臂自动抓取和打开药瓶。我们在模拟环境中进行了几轮实验,评估了系统的识别率、抓取成功率和打开速度。实验结果表明,基于纳米光子传感器的瓶子识别系统的准确率和抓取成功率较高,打开时间大大缩短,与传统方法相比,新系统在识别和操作上都显示出明显的优势。该研究证明了纳米光子学传感技术在静脉输液机器人中的潜力。通过对瓶子识别、抓取和打开过程的优化,该系统不仅提高了医疗操作的安全性和效率,而且有望在未来的医疗自动化中发挥作用。未来的工作重点将是进一步完善系统集成和优化算法,以适应更复杂的临床环境。
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引用次数: 0
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SLAS Technology
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