梨中thaumatin样蛋白家族的全基因组鉴定及其在花粉生长中的功能分析

IF 3.5 3区 生物学 Q1 PLANT SCIENCES Plant Growth Regulation Pub Date : 2024-05-29 DOI:10.1007/s10725-024-01148-8
Hao Zhang, Xueying Liu, Chao Tang, Ming Qian, Mingliang Zhang, Zhu Xie, Mayan Wu, Waqar Khan, Shaoling Zhang, Juyou Wu, Peng Wang
{"title":"梨中thaumatin样蛋白家族的全基因组鉴定及其在花粉生长中的功能分析","authors":"Hao Zhang, Xueying Liu, Chao Tang, Ming Qian, Mingliang Zhang, Zhu Xie, Mayan Wu, Waqar Khan, Shaoling Zhang, Juyou Wu, Peng Wang","doi":"10.1007/s10725-024-01148-8","DOIUrl":null,"url":null,"abstract":"<p>Thaumatin-like proteins (TLPs) are crucial for plant growth and development. However, the function of TLPs in pear pollen tube growth has not been fully elucidated. In this study, we characterized 40 <i>PbrTLPs</i> within the pear (<i>Pyrus bretschneideri</i>) genome and classified them into 10 groups according to their phylogenetic relationships, which exhibited significant similarities in gene structure and conserved motifs within each group. Microcollinearity analysis indicated that recent whole genome duplication (WGD) events significantly contributed to the expansion of the <i>PbrTLP</i> family, with purifying selection predominantly shaping the evolution of <i>PbrTLPs</i>. Transcriptomic data and qRT-PCR analysis revealed tissue-specific expression patterns of <i>PbrTLP</i> members. Notably, <i>PbrTLP36</i> was identified as a strongly expressed gene in pollen tubes and confirmed to be a secreted protein. Functional assays in pollen tubes and tobacco cells suggested that knockdown the <i>PbrTLP36</i> expression did not affect pollen tube growth, but the PbrTLP36 protein did confer antimicrobial activity. PbrTLP36 protein could effectively reduce the inhibitory effect of black spot fungi on pollen. The promoter <i>cis</i>-elements of <i>PbrTLPs</i> suggest potential responsiveness to a variety of abiotic and biotic stresses. Functional interaction network analysis suggested that several resistance genes acted synergistically with PbrTLP36. In conclusion, our study characterized the evolutionary pattern of the <i>PbrTLP</i> family and revealed the specific function of PbrTLP36, laying the groundwork for further functional investigations.</p>","PeriodicalId":20412,"journal":{"name":"Plant Growth Regulation","volume":"266 1","pages":""},"PeriodicalIF":3.5000,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genome-wide identification of thaumatin-like protein family in pear and functional analysis their roles in pollen growth\",\"authors\":\"Hao Zhang, Xueying Liu, Chao Tang, Ming Qian, Mingliang Zhang, Zhu Xie, Mayan Wu, Waqar Khan, Shaoling Zhang, Juyou Wu, Peng Wang\",\"doi\":\"10.1007/s10725-024-01148-8\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Thaumatin-like proteins (TLPs) are crucial for plant growth and development. However, the function of TLPs in pear pollen tube growth has not been fully elucidated. In this study, we characterized 40 <i>PbrTLPs</i> within the pear (<i>Pyrus bretschneideri</i>) genome and classified them into 10 groups according to their phylogenetic relationships, which exhibited significant similarities in gene structure and conserved motifs within each group. Microcollinearity analysis indicated that recent whole genome duplication (WGD) events significantly contributed to the expansion of the <i>PbrTLP</i> family, with purifying selection predominantly shaping the evolution of <i>PbrTLPs</i>. Transcriptomic data and qRT-PCR analysis revealed tissue-specific expression patterns of <i>PbrTLP</i> members. Notably, <i>PbrTLP36</i> was identified as a strongly expressed gene in pollen tubes and confirmed to be a secreted protein. Functional assays in pollen tubes and tobacco cells suggested that knockdown the <i>PbrTLP36</i> expression did not affect pollen tube growth, but the PbrTLP36 protein did confer antimicrobial activity. PbrTLP36 protein could effectively reduce the inhibitory effect of black spot fungi on pollen. The promoter <i>cis</i>-elements of <i>PbrTLPs</i> suggest potential responsiveness to a variety of abiotic and biotic stresses. Functional interaction network analysis suggested that several resistance genes acted synergistically with PbrTLP36. In conclusion, our study characterized the evolutionary pattern of the <i>PbrTLP</i> family and revealed the specific function of PbrTLP36, laying the groundwork for further functional investigations.</p>\",\"PeriodicalId\":20412,\"journal\":{\"name\":\"Plant Growth Regulation\",\"volume\":\"266 1\",\"pages\":\"\"},\"PeriodicalIF\":3.5000,\"publicationDate\":\"2024-05-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Plant Growth Regulation\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s10725-024-01148-8\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Growth Regulation","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s10725-024-01148-8","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0

摘要

Thaumatin样蛋白(TLPs)对植物的生长和发育至关重要。然而,TLPs 在梨花粉管生长中的功能尚未完全阐明。在这项研究中,我们对梨(Pyrus bretschneideri)基因组中的 40 个 PbrTLPs 进行了表征,并根据其系统发育关系将其分为 10 组,每组中的基因结构和保守基序都有显著的相似性。微共线性分析表明,最近的全基因组重复(WGD)事件极大地促进了PbrTLP家族的扩展,纯化选择主要影响了PbrTLPs的进化。转录组数据和qRT-PCR分析揭示了PbrTLP成员的组织特异性表达模式。值得注意的是,PbrTLP36被确定为花粉管中的强表达基因,并被证实是一种分泌蛋白。在花粉管和烟草细胞中进行的功能测试表明,PbrTLP36的表达被敲除不会影响花粉管的生长,但PbrTLP36蛋白却具有抗菌活性。PbrTLP36蛋白能有效降低黑斑真菌对花粉的抑制作用。PbrTLPs的启动子顺式元件表明其对各种非生物和生物胁迫具有潜在的响应性。功能互作网络分析表明,多个抗性基因与 PbrTLP36 起着协同作用。总之,我们的研究描述了PbrTLP家族的进化模式,揭示了PbrTLP36的特异功能,为进一步的功能研究奠定了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Genome-wide identification of thaumatin-like protein family in pear and functional analysis their roles in pollen growth

Thaumatin-like proteins (TLPs) are crucial for plant growth and development. However, the function of TLPs in pear pollen tube growth has not been fully elucidated. In this study, we characterized 40 PbrTLPs within the pear (Pyrus bretschneideri) genome and classified them into 10 groups according to their phylogenetic relationships, which exhibited significant similarities in gene structure and conserved motifs within each group. Microcollinearity analysis indicated that recent whole genome duplication (WGD) events significantly contributed to the expansion of the PbrTLP family, with purifying selection predominantly shaping the evolution of PbrTLPs. Transcriptomic data and qRT-PCR analysis revealed tissue-specific expression patterns of PbrTLP members. Notably, PbrTLP36 was identified as a strongly expressed gene in pollen tubes and confirmed to be a secreted protein. Functional assays in pollen tubes and tobacco cells suggested that knockdown the PbrTLP36 expression did not affect pollen tube growth, but the PbrTLP36 protein did confer antimicrobial activity. PbrTLP36 protein could effectively reduce the inhibitory effect of black spot fungi on pollen. The promoter cis-elements of PbrTLPs suggest potential responsiveness to a variety of abiotic and biotic stresses. Functional interaction network analysis suggested that several resistance genes acted synergistically with PbrTLP36. In conclusion, our study characterized the evolutionary pattern of the PbrTLP family and revealed the specific function of PbrTLP36, laying the groundwork for further functional investigations.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Plant Growth Regulation
Plant Growth Regulation 生物-植物科学
CiteScore
6.90
自引率
9.50%
发文量
139
审稿时长
4.5 months
期刊介绍: Plant Growth Regulation is an international journal publishing original articles on all aspects of plant growth and development. We welcome manuscripts reporting question-based research using hormonal, physiological, environmental, genetical, biophysical, developmental or molecular approaches to the study of plant growth regulation. Emphasis is placed on papers presenting the results of original research. Occasional reviews on important topics will also be welcome. All contributions must be in English.
期刊最新文献
Plant growth-promoting rhizobacteria biochemical pathways and their environmental impact: a review of sustainable farming practices Beyond the surface: delving into plant signaling during flooding stress The cross-talk of brassinosteroid signaling and strigolactone signaling during mesocotyl development in rice Identification and characterization of microRNAs in virus-resistant and susceptible barley cultivars The DOF transcription factor, FaDOF1 affects eugenol accumulation in strawberry
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1