Kushneria phosphatilytica YCWA18T 的完整基因组序列揭示了 Kushneria 属的溶解 P 活性

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY Marine genomics Pub Date : 2024-05-30 DOI:10.1016/j.margen.2024.101123
Guang-xun Du , Wen-sheng Yu , Ji-kun Su , Guo-chong Liu , Ping Gao , Xu-guang Hong , Ling-yun Qu
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引用次数: 0

摘要

Kushneria phosphatilytica YCWA18T(= CGMCC 1.9149T = NCCB 100306T)是从中国黄海东岸盐场采集的沉积物中分离出来的。经测序,其基因组由一条环状染色体组成,大小为 3,624,619 bp,DNA G + C 含量为 59.13%。共获得 3267 个蛋白质编码基因、64 个 tRNA 基因和 12 个 rRNA 基因。基因组注释表明,K. phosphatilytica YCWA18T 的基因组中有 34 个参与磷(P)溶解/代谢的基因,如对 Kushneria 菌株的基因组比较分析表明,ghdh、pqq、phoA、phoD 和 phoX 广泛分布于这些菌株中,这表明 Kushneria 属可能在磷循环中发挥着重要作用。此外,在 K. phosphatilytica YCWA18T 的基因组中还检测到了许多耐盐基因。这项研究和基因组序列数据将用于进一步研究,并将为 Kushneria 菌株潜在的生物技术和农业应用提供深入见解。
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Complete genome sequence of Kushneria phosphatilytica YCWA18T reveals the P-solubilizing activity of the genus Kushneria

Kushneria phosphatilytica YCWA18T (= CGMCC 1.9149T = NCCB 100306T) was isolated from sediment collected in a saltern on the eastern coast of Yellow Sea in China. The genome was sequenced and comprised of one circular chromosome with the size of 3,624,619 bp and DNA G + C content of 59.13%. A total of 3267 protein-coding genes, 64 tRNA genes and 12 rRNA genes were obtained. Genomic annotation indicated that the genome of K. phosphatilytica YCWA18T had 34 genes involved in phosphorus (P) solubilization/metabolism, e.g., gdh, pqq, phoA, phoD and phoX, which products can convert insoluble P-containing compounds to more bio-available dissolved inorganic P. Comparative genomic analysis of Kushneria strains revealed that gdh, pqq, phoA, phoD and phoX were widely distributed in these strains, indicating the genus Kushneria may play an important role in the P cycle. Additionally, a multitude of salt tolerance genes were detected in the genome of K. phosphatilytica YCWA18T. This study and the genome sequence data will be available for further research and will provide insights into potential biotechnological and agricultural applications of Kushneria strains.

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来源期刊
Marine genomics
Marine genomics 生物-遗传学
CiteScore
3.60
自引率
5.30%
发文量
50
审稿时长
29 days
期刊介绍: The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
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