Guang-xun Du , Wen-sheng Yu , Ji-kun Su , Guo-chong Liu , Ping Gao , Xu-guang Hong , Ling-yun Qu
{"title":"Kushneria phosphatilytica YCWA18T 的完整基因组序列揭示了 Kushneria 属的溶解 P 活性","authors":"Guang-xun Du , Wen-sheng Yu , Ji-kun Su , Guo-chong Liu , Ping Gao , Xu-guang Hong , Ling-yun Qu","doi":"10.1016/j.margen.2024.101123","DOIUrl":null,"url":null,"abstract":"<div><p><em>Kushneria phosphatilytica</em> YCWA18<sup>T</sup> (= CGMCC 1.9149<sup>T</sup> = NCCB 100306<sup>T</sup>) was isolated from sediment collected in a saltern on the eastern coast of Yellow Sea in China. The genome was sequenced and comprised of one circular chromosome with the size of 3,624,619 bp and DNA G + C content of 59.13%. A total of 3267 protein-coding genes, 64 tRNA genes and 12 rRNA genes were obtained. Genomic annotation indicated that the genome of <em>K</em>. <em>phosphatilytica</em> YCWA18<sup>T</sup> had 34 genes involved in phosphorus (P) solubilization/metabolism, e.g., <em>gdh</em>, <em>pqq</em>, <em>phoA</em>, <em>phoD</em> and <em>phoX</em>, which products can convert insoluble P-containing compounds to more bio-available dissolved inorganic P. Comparative genomic analysis of <em>Kushneria</em> strains revealed that <em>gdh</em>, <em>pqq</em>, <em>phoA</em>, <em>phoD</em> and <em>phoX</em> were widely distributed in these strains, indicating the genus <em>Kushneria</em> may play an important role in the P cycle. Additionally, a multitude of salt tolerance genes were detected in the genome of <em>K</em>. <em>phosphatilytica</em> YCWA18<sup>T</sup>. This study and the genome sequence data will be available for further research and will provide insights into potential biotechnological and agricultural applications of <em>Kushneria</em> strains.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":"76 ","pages":"Article 101123"},"PeriodicalIF":1.3000,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Complete genome sequence of Kushneria phosphatilytica YCWA18T reveals the P-solubilizing activity of the genus Kushneria\",\"authors\":\"Guang-xun Du , Wen-sheng Yu , Ji-kun Su , Guo-chong Liu , Ping Gao , Xu-guang Hong , Ling-yun Qu\",\"doi\":\"10.1016/j.margen.2024.101123\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><em>Kushneria phosphatilytica</em> YCWA18<sup>T</sup> (= CGMCC 1.9149<sup>T</sup> = NCCB 100306<sup>T</sup>) was isolated from sediment collected in a saltern on the eastern coast of Yellow Sea in China. The genome was sequenced and comprised of one circular chromosome with the size of 3,624,619 bp and DNA G + C content of 59.13%. A total of 3267 protein-coding genes, 64 tRNA genes and 12 rRNA genes were obtained. Genomic annotation indicated that the genome of <em>K</em>. <em>phosphatilytica</em> YCWA18<sup>T</sup> had 34 genes involved in phosphorus (P) solubilization/metabolism, e.g., <em>gdh</em>, <em>pqq</em>, <em>phoA</em>, <em>phoD</em> and <em>phoX</em>, which products can convert insoluble P-containing compounds to more bio-available dissolved inorganic P. Comparative genomic analysis of <em>Kushneria</em> strains revealed that <em>gdh</em>, <em>pqq</em>, <em>phoA</em>, <em>phoD</em> and <em>phoX</em> were widely distributed in these strains, indicating the genus <em>Kushneria</em> may play an important role in the P cycle. Additionally, a multitude of salt tolerance genes were detected in the genome of <em>K</em>. <em>phosphatilytica</em> YCWA18<sup>T</sup>. This study and the genome sequence data will be available for further research and will provide insights into potential biotechnological and agricultural applications of <em>Kushneria</em> strains.</p></div>\",\"PeriodicalId\":18321,\"journal\":{\"name\":\"Marine genomics\",\"volume\":\"76 \",\"pages\":\"Article 101123\"},\"PeriodicalIF\":1.3000,\"publicationDate\":\"2024-05-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Marine genomics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1874778724000412\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Marine genomics","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1874778724000412","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
Complete genome sequence of Kushneria phosphatilytica YCWA18T reveals the P-solubilizing activity of the genus Kushneria
Kushneria phosphatilytica YCWA18T (= CGMCC 1.9149T = NCCB 100306T) was isolated from sediment collected in a saltern on the eastern coast of Yellow Sea in China. The genome was sequenced and comprised of one circular chromosome with the size of 3,624,619 bp and DNA G + C content of 59.13%. A total of 3267 protein-coding genes, 64 tRNA genes and 12 rRNA genes were obtained. Genomic annotation indicated that the genome of K. phosphatilytica YCWA18T had 34 genes involved in phosphorus (P) solubilization/metabolism, e.g., gdh, pqq, phoA, phoD and phoX, which products can convert insoluble P-containing compounds to more bio-available dissolved inorganic P. Comparative genomic analysis of Kushneria strains revealed that gdh, pqq, phoA, phoD and phoX were widely distributed in these strains, indicating the genus Kushneria may play an important role in the P cycle. Additionally, a multitude of salt tolerance genes were detected in the genome of K. phosphatilytica YCWA18T. This study and the genome sequence data will be available for further research and will provide insights into potential biotechnological and agricultural applications of Kushneria strains.
期刊介绍:
The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include:
• Population genomics and ecology
• Evolutionary and developmental genomics
• Comparative genomics
• Metagenomics
• Environmental genomics
• Systems biology
More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.