光流体时间拉伸成像流式细胞仪,实时存储速度超过 5.9 GB/s。

IF 2.5 4区 生物学 Q3 BIOCHEMICAL RESEARCH METHODS Cytometry Part A Pub Date : 2024-06-06 DOI:10.1002/cyto.a.24854
Dan Hou, Jiehua Zhou, Ruidong Xiao, Kaining Yang, Yan Ding, Du Wang, Guoqiang Wu, Cheng Lei
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引用次数: 0

摘要

光流体时间拉伸成像流式细胞仪(OTS-IFC)具有高通量和连续图像采集的特点,为高精度细胞分析和稀有细胞的高灵敏度检测提供了合适的解决方案。然而,连续大数据流的传输和存储仍然是一项挑战。在这项研究中,我们设计了一种高速流式存储策略来实时存储 OTS-IFC 数据,克服了数据采集和处理子系统的快速生成速度与传输和存储子系统的相对较慢的存储速度之间的不平衡。这一策略利用建立在生产者-消费者模型基础上的异步缓冲结构,优化了内存使用,从而提高了数据吞吐量和稳定性。我们评估了高速流存储策略在普通商用设备上进行超大规模血细胞成像时的存储性能。实验结果表明,它能提供高达 5891 MB/s 的连续数据吞吐量。
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Optofluidic time-stretch imaging flow cytometry with a real-time storage rate beyond 5.9 GB/s

Optofluidic time-stretch imaging flow cytometry (OTS-IFC) provides a suitable solution for high-precision cell analysis and high-sensitivity detection of rare cells due to its high-throughput and continuous image acquisition. However, transferring and storing continuous big data streams remains a challenge. In this study, we designed a high-speed streaming storage strategy to store OTS-IFC data in real-time, overcoming the imbalance between the fast generation speed in the data acquisition and processing subsystem and the comparatively slower storage speed in the transmission and storage subsystem. This strategy, utilizing an asynchronous buffer structure built on the producer-consumer model, optimizes memory usage for enhanced data throughput and stability. We evaluated the storage performance of the high-speed streaming storage strategy in ultra-large-scale blood cell imaging on a common commercial device. The experimental results show that it can provide a continuous data throughput of up to 5891 MB/s.

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来源期刊
Cytometry Part A
Cytometry Part A 生物-生化研究方法
CiteScore
8.10
自引率
13.50%
发文量
183
审稿时长
4-8 weeks
期刊介绍: Cytometry Part A, the journal of quantitative single-cell analysis, features original research reports and reviews of innovative scientific studies employing quantitative single-cell measurement, separation, manipulation, and modeling techniques, as well as original articles on mechanisms of molecular and cellular functions obtained by cytometry techniques. The journal welcomes submissions from multiple research fields that fully embrace the study of the cytome: Biomedical Instrumentation Engineering Biophotonics Bioinformatics Cell Biology Computational Biology Data Science Immunology Parasitology Microbiology Neuroscience Cancer Stem Cells Tissue Regeneration.
期刊最新文献
OMIP‐108: 22‐color flow cytometry panel for detection and monitoring of chimerism and immune reconstitution in porcine‐to‐baboon models of operational xenotransplant tolerance studies Issue Information - TOC Volume 105A, Number 9, September 2024 Cover Image OMIP‐069 version 2: Update to the 40‐color full Spectrum flow cytometry panel for deep immunophenotyping of major cell subsets in human peripheral blood OMIP‐107: 8‐color whole blood immunophenotyping panel for the characterization and quantification of lymphocyte subsets and monocytes in swine
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