针对大分子晶体学实验的快速高效无损压缩算法研究。

IF 2.5 3区 物理与天体物理 Journal of Synchrotron Radiation Pub Date : 2024-07-01 Epub Date: 2024-06-05 DOI:10.1107/S160057752400359X
Herbert J Bernstein, Jean Jakoncic
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引用次数: 0

摘要

结构生物学实验从最先进的同步加速器数据采集中获益匪浅。利用 200 Gbps 或更高的网络连接,可以在大面积光子计数像素阵列探测器上以超过每秒 1000 帧的成帧率获取大分子晶体学(MX)衍射数据。在极端情况下,这意味着原始数据吞吐量约为 25 GB s-1,如果不进行压缩,几乎不可能以合理的成本提供这种数据。几十年来,我们的领域一直使用无损压缩技术来管理此类数据收集。现在,许多 MX 光束线都配备了 DECTRIS Eiger 探测器,所有这些探测器在默认情况下都采用了优化的压缩算法,它们在当前的成帧率和典型衍射数据方面表现良好。不过,更好的无损压缩算法已经开发出来,现在可供研究人员使用。在此,我们对最新、最有前途的无损压缩算法之一进行了研究,该算法适用于各种衍射数据,如在最先进的 MX 光束线上常规获取的数据。
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Investigation of fast and efficient lossless compression algorithms for macromolecular crystallography experiments.

Structural biology experiments benefit significantly from state-of-the-art synchrotron data collection. One can acquire macromolecular crystallography (MX) diffraction data on large-area photon-counting pixel-array detectors at framing rates exceeding 1000 frames per second, using 200 Gbps network connectivity, or higher when available. In extreme cases this represents a raw data throughput of about 25 GB s-1, which is nearly impossible to deliver at reasonable cost without compression. Our field has used lossless compression for decades to make such data collection manageable. Many MX beamlines are now fitted with DECTRIS Eiger detectors, all of which are delivered with optimized compression algorithms by default, and they perform well with current framing rates and typical diffraction data. However, better lossless compression algorithms have been developed and are now available to the research community. Here one of the latest and most promising lossless compression algorithms is investigated on a variety of diffraction data like those routinely acquired at state-of-the-art MX beamlines.

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来源期刊
Journal of Synchrotron Radiation
Journal of Synchrotron Radiation INSTRUMENTS & INSTRUMENTATIONOPTICS&-OPTICS
CiteScore
5.60
自引率
12.00%
发文量
289
审稿时长
1 months
期刊介绍: Synchrotron radiation research is rapidly expanding with many new sources of radiation being created globally. Synchrotron radiation plays a leading role in pure science and in emerging technologies. The Journal of Synchrotron Radiation provides comprehensive coverage of the entire field of synchrotron radiation and free-electron laser research including instrumentation, theory, computing and scientific applications in areas such as biology, nanoscience and materials science. Rapid publication ensures an up-to-date information resource for scientists and engineers in the field.
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