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Pulse-by-pulse transient thermal deformation in crystal optics under high-repetition-rate FEL. 高重复率FEL下晶体光学脉冲瞬态热变形。
IF 2.5 3区 物理与天体物理 Pub Date : 2025-01-01 DOI: 10.1107/S160057752401155X
Lin Zhang, Jerome Hastings, Zhirong Huang, Jingyi Tang, Diling Zhu

Time-domain modeling of the thermal deformation of crystal optics can help define acceptable operational ranges across the pulse-energy repetition-rate phase space. In this paper, we have studied the transient thermal deformation of a water-cooled diamond crystal for a cavity-based X-ray free-electron laser (CBXFEL), either an X-ray free-electron laser oscillator (XFELO) or a regenerative amplifier X-ray free-electron laser (RAFEL), by numerical simulations including finite-element analysis and advanced data processing. Pulse-by-pulse transient thermal deformation of a 50 µm-thick diamond crystal has been performed with X-ray pulse repetition rates between 50 kHz and 1 MHz. Results for temperature and thermal deformation have been compared with the results of transient analysis using a continuous wave (CW) power loading. Temperature and thermal deformation results from pulse-by-pulse transient analysis vary with time about the results for the CW case for the same average power. The variation amplitude increases with pulse energy and decreases with repetition rate. When the repetition rate increases to infinity, both temperature and thermal deformation converge to the results for the CW case. Two critical time scales for the operation of crystal optics in a CBXFEL are (1) first-turn time, i.e. the time for the XFEL pulse to complete the first turn around the cavity so that the crystal sees the recirculated XFEL pulse, and (2) period-end time, i.e. the time that the next electron bunch arrives for the amplification, so that the crystal outcouples the amplified FEL power. For the same average power, simulation results show that the crystal thermal deformation seen by the XFEL beam decreases with repetition rate at the first-turn time of a 300 m-long cavity and increases with repetition rate at the period-end time. For the wavefront preservation requirement of the crystal optics, a pulse-energy versus repetition-rate phase space has been established. The upper bounds of the pulse energy at both first-turn and period-end times decreases with repetition rate, especially at the period-end time. The upper bound of the thermal deformation of the crystal at the period-end time for any repetition frequency can be estimated from the CW case. For a water-cooled diamond crystal of dimension 5 mm × 5 mm × 0.05 mm, the time to reach a quasi steady-state is about 50 ms for temperature and 50 µs for thermal deformation.

晶体光学热变形的时域建模有助于在脉冲能量重复率相空间中定义可接受的工作范围。本文通过数值模拟,包括有限元分析和先进的数据处理,研究了用于腔基x射线自由电子激光器(CBXFEL)的水冷金刚石晶体的瞬态热变形,无论是x射线自由电子激光器振荡器(XFELO)还是再生放大器x射线自由电子激光器(RAFEL)。在50 kHz和1 MHz的x射线脉冲重复率下,对50 μ m厚的金刚石晶体进行了脉冲瞬态热变形。温度和热变形的计算结果与连续波(CW)功率加载的瞬态分析结果进行了比较。在相同平均功率的连续波情况下,逐脉冲瞬态分析得到的温度和热变形随时间变化。变化幅度随脉冲能量的增加而增大,随重复频率的增加而减小。当重复频率增加到无穷大时,温度和热变形都收敛于连续波情况下的结果。在CBXFEL中,晶体光学工作的两个关键时间尺度是(1)首匝时间,即XFEL脉冲在腔内完成第一次旋转,使晶体看到再循环的XFEL脉冲的时间;(2)周期结束时间,即下一个电子束到达放大的时间,使晶体超越放大的FEL功率。在相同的平均功率下,模拟结果表明,在300 m长的腔体中,在第一回合时,XFEL光束的晶体热变形随重复率的增加而减小,在周期结束时随重复率的增加而增大。为了满足晶体光学的波前保存要求,建立了脉冲能量-重复率相空间。脉冲能量的上界在第一圈和周期结束时都随重复频率的增加而减小,尤其是在周期结束时。在任意重复频率下,晶体在周期结束时的热变形上界可以由连续波情况估计出来。对于尺寸为5mm × 5mm × 0.05 mm的水冷金刚石晶体,温度达到准稳态的时间约为50 ms,热变形达到准稳态的时间约为50µs。
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引用次数: 0
Status of macromolecular crystallography beamlines at SSRF. SSRF大分子晶体学光束线研究现状。
IF 2.5 3区 物理与天体物理 Pub Date : 2025-01-01 DOI: 10.1107/S1600577524011597
Huating Kong, Huan Zhou, Qin Xu, Ke Liu, Kunhao Zhang, Xingya Wang, Weiwei Wang, Zhijun Wang, Sisheng Wang, Yuzhu Wang, Lin Tang, Feng Yu, Jianhua He, Qisheng Wang

Shanghai Synchrotron Radiation Facility (SSRF) is a third-generation 3.5 GeV synchrotron facility located on the Chinese mainland, operational for user applications since 2009. With the completion of its Phase II project this year, SSRF now supports over 40 experimental stations across various research fields. For the structural biology community, there are three macromolecular crystallography (MX) beamlines (BL02U1, BL17UM and BL10U2) and one endstation at the white X-ray beamline (BL03HB) managed by SSRF to meet the needs of both academic and industrial users seeking to determine macromolecular crystal structures. The MX group at SSRF is dedicated to continuously upgrading these beamlines in terms of technology and scientific capabilities. This paper reports on the current status of all the MX beamlines at SSRF and discusses emerging trends.

上海同步辐射设施(SSRF)是位于中国大陆的第三代 3.5 GeV 同步辐射设施,自 2009 年起开始为用户应用提供服务。随着二期工程于今年竣工,上海同步辐射设施目前已支持 40 多个实验站,涵盖多个研究领域。在结构生物学领域,有三条大分子晶体学(MX)光束线(BL02U1、BL17UM和BL10U2)和一个白光X射线光束线端站(BL03HB)由SSRF管理,以满足学术界和工业界用户测定大分子晶体结构的需求。SSRF 的 MX 小组致力于不断提升这些光束线的技术和科学能力。本文报告了 SSRF 所有 MX 光束线的现状,并讨论了新出现的趋势。
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引用次数: 0
SiC free-standing membrane for X-ray intensity monitoring in synchrotron radiation beamlines. 用于同步辐射束线x射线强度监测的SiC独立式膜。
IF 2.5 3区 物理与天体物理 Pub Date : 2025-01-01 DOI: 10.1107/S1600577524010646
Gabriele Trovato, Marzio De Napoli, Christian Gollwitzer, Simone Finizio, Michael Krumrey, Francesco La Via, Luca Lanzanò, Giuliana Milluzzo, Samuele Moscato, Matthias Müller, Francesco Romano, Dario Ferreira Sanchez, Massimo Camarda

For many synchrotron radiation experiments, it is critical to perform continuous, real-time monitoring of the X-ray flux for normalization and stabilization purposes. Traditional transmission-mode monitors included metal mesh foils and ionization chambers, which suffered from low signal stability and size constraints. Solid-state detectors are now considered superior alternatives for many applications, offering appealing features like compactness and signal stability. However, silicon-based detectors suffer from poor radiation resistance, and diamond detectors are limited in scalability and are expensive to produce. Silicon carbide (SiC) has recently emerged as an alternative to both materials, offering a high-quality mature semiconductor with high thermal conductivity and radiation hardness. This study focuses on a systematic exploration of the SiC `free-standing membrane' devices developed by SenSiC GmbH. In particular, we performed in-depth sensor-response analysis with photon energies ranging from tender (1.75 keV) to hard (10 keV) X-rays at the Four-Crystal Monochromator beamline in the PTB laboratory at the synchrotron radiation facility BESSY II, studying uniformity of transmission and responsivity compared with the state-of-the-art beam monitors. Furthermore, we theoretically evaluated the expected signal in different regions of the sensors, also taking into account the effect of charge diffusion from the SiC substrate in the case of the not-carved region.

对于许多同步辐射实验来说,为了标准化和稳定化的目的,对x射线通量进行连续的实时监测是至关重要的。传统的传输模式监测仪包括金属网箔和电离室,它们受到信号稳定性低和尺寸限制的影响。固态探测器现在被认为是许多应用的优越选择,提供吸引人的特点,如紧凑和信号稳定。然而,硅基探测器的抗辐射性较差,金刚石探测器的可扩展性有限,生产成本昂贵。碳化硅(SiC)最近作为这两种材料的替代品出现,提供了具有高导热性和辐射硬度的高质量成熟半导体。本研究的重点是系统探索由SenSiC公司开发的SiC“独立式膜”器件。特别是,我们在同步辐射设施BESSY II的PTB实验室的四晶单色仪光束线上进行了深入的传感器响应分析,光子能量范围从弱(1.75 keV)到硬(10 keV) x射线,研究了与最先进的光束监视器相比的传输均匀性和响应性。此外,我们从理论上评估了传感器不同区域的期望信号,也考虑了在未切割区域的情况下来自SiC衬底的电荷扩散的影响。
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引用次数: 0
Hard X-ray single-shot spectrometer of PAL-XFEL. PAL-XFEL 的硬 X 射线单发光谱仪。
IF 2.5 3区 物理与天体物理 Pub Date : 2025-01-01 DOI: 10.1107/S1600577524009779
Sangsoo Kim, Jae Hyuk Lee, Daewoong Nam, Gisu Park, Myong Jin Kim, Intae Eom, Inhyuk Nam, Chi Hyun Shim, Jangwoo Kim

A transmissive single-shot spectrometer has been developed to monitor shot-to-shot spectral structures in the hard X-ray beamline of the Pohang Accelerator Laboratory X-ray Free Electron Laser (PAL-XFEL). The established spectrometer comprises 10 µm-thick Si crystals bent to a radius of curvature of 100 mm. Depending on the photon energy range, either the Si (111) or Si (110) crystal can be selected for spectral analysis. Especially in the energy range 4.5-17 keV, the spectrometer is designed to cover a spectral range wider than the full free-electron laser bandwidth and to guarantee a high resolution sufficient for resolving each spectral spike. This paper presents the design specifications, instruments and performance of this spectrometer, which has also been applied to demonstrate the spectral properties of various XFEL sources, such as self-amplified spontaneous emission, monochromatic and seeded beams.

为监测浦项加速器实验室 X 射线自由电子激光器(PAL-XFEL)硬 X 射线光束线的射击到射击光谱结构,开发了一种透射式单发光谱仪。该光谱仪由 10 微米厚的硅晶体组成,曲率半径为 100 毫米。根据光子能量范围的不同,可选择硅(111)或硅(110)晶体进行光谱分析。特别是在 4.5-17 keV 的能量范围内,光谱仪的设计可以覆盖比整个自由电子激光带宽更宽的光谱范围,并保证足够高的分辨率来分辨每个光谱尖峰。本文介绍了该光谱仪的设计规格、仪器和性能,它还被用于演示各种 XFEL 光源的光谱特性,如自放大自发辐射、单色光束和种子光束。
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引用次数: 0
Picometre-level surface control of a closed-loop, adaptive X-ray mirror with integrated real-time interferometric feedback. 具有集成实时干涉反馈的闭环自适应x射线反射镜的皮米级表面控制。
IF 2.5 3区 物理与天体物理 Pub Date : 2025-01-01 DOI: 10.1107/S1600577524011007
Ioana Theodora Nistea, Simon G Alcock, Andrew Foster, Vivek Badami, Riccardo Signorato, Matteo Fusco

We provide a technical description and experimental results of the practical development and offline testing of an innovative, closed-loop, adaptive mirror system capable of making rapid, precise and ultra-stable changes in the size and shape of reflected X-ray beams generated at synchrotron light and free-electron laser facilities. The optical surface of a piezoelectric bimorph deformable mirror is continuously monitored at 20 kHz by an array of interferometric sensors. This matrix of height data is autonomously converted into voltage commands that are sent at 1 Hz to the piezo actuators to modify the shape of the mirror optical surface. Hence, users can rapidly switch in closed-loop between pre-calibrated X-ray wavefronts by selecting the corresponding freeform optical profile. This closed-loop monitoring is shown to repeatably bend and stabilize the low- and mid-spatial frequency components of the mirror surface to any given profile with an error <200 pm peak-to-valley, regardless of the recent history of bending and hysteresis. Without closed-loop stabilization after bending, the mirror height profile is shown to drift by hundreds of nanometres, which will slowly distort the X-ray wavefront. The metrology frame that holds the interferometric sensors is designed to be largely insensitive to temperature changes, providing an ultra-stable reference datum to enhance repeatability. We demonstrate an unprecedented level of fast and precise optical control in the X-ray domain: the profile of a macroscopic X-ray mirror of over 0.5 m in length was freely adjusted and stabilized to atomic level height resolution. Aside from demonstrating the extreme sensitivity of the interferometer sensors, this study also highlights the voltage repeatability and stability of the programmable high-voltage power supply, the accuracy of the correction-calculation algorithms and the almost instantaneous response of the bimorph mirror to command voltage pulses. Finally, we demonstrate the robustness of the system by showing that the bimorph mirror's optical surface was not damaged by more than 1 million voltage cycles, including no occurrence of the `junction effect' or weakening of piezoelectric actuator strength. Hence, this hardware combination provides a real time, hyper-precise, temperature-insensitive, closed-loop system which could benefit many optical communities, including EUV lithography, who require sub-nanometre bending control of the mirror form.

我们提供了一种创新的、闭环的、自适应镜像系统的实际开发和离线测试的技术描述和实验结果,该系统能够快速、精确和超稳定地改变同步加速器和自由电子激光设备产生的反射x射线光束的大小和形状。利用干涉测量传感器阵列对压电双晶片变形镜的光学表面进行了20 kHz的连续监测。高度数据矩阵自动转换成电压命令,以1hz的频率发送给压电致动器,以修改镜面光学表面的形状。因此,用户可以通过选择相应的自由曲面光学轮廓,在预先校准的x射线波前之间快速闭环切换。这种闭环监测被证明可以重复弯曲和稳定镜面的低频和中频分量到任何给定的误差剖面
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引用次数: 0
The Heisenberg-RIXS instrument at the European XFEL. 欧洲自由电子激光器的海森堡- rixs仪器。
IF 2.5 3区 物理与天体物理 Pub Date : 2025-01-01 DOI: 10.1107/S1600577524010890
Justine Schlappa, Giacomo Ghiringhelli, Benjamin E Van Kuiken, Martin Teichmann, Piter S Miedema, Jan Torben Delitz, Natalia Gerasimova, Serguei Molodtsov, Luigi Adriano, Bernard Baranasic, Carsten Broers, Robert Carley, Patrick Gessler, Nahid Ghodrati, David Hickin, Le Phuong Hoang, Manuel Izquierdo, Laurent Mercadier, Giuseppe Mercurio, Sergii Parchenko, Marijan Stupar, Zhong Yin, Leonardo Martinelli, Giacomo Merzoni, Ying Ying Peng, Torben Reuss, Sreeju Sreekantan Nair Lalithambika, Simone Techert, Tim Laarmann, Simo Huotari, Christian Schroeter, Burkhard Langer, Tatjana Giessel, Jana Buchheim, Grzegorz Gwalt, Andrey Sokolov, Frank Siewert, Robby Buechner, Vinicius Vaz da Cruz, Sebastian Eckert, Chun Yu Liu, Christian Sohrt, Christian Weniger, Annette Pietzsch, Stefan Neppl, Friedmar Senf, Andreas Scherz, Alexander Föhlisch

Resonant inelastic X-ray scattering (RIXS) is an ideal X-ray spectroscopy method to push the combination of energy and time resolutions to the Fourier transform ultimate limit, because it is unaffected by the core-hole lifetime energy broadening. Also, in pump-probe experiments the interaction time is made very short by the same core-hole lifetime. RIXS is very photon hungry so it takes great advantage from high-repetition-rate pulsed X-ray sources like the European XFEL. The Heisenberg RIXS instrument is designed for RIXS experiments in the soft X-ray range with energy resolution approaching the Fourier and the Heisenberg limits. It is based on a spherical grating with variable line spacing and a position-sensitive 2D detector. Initially, two gratings were installed to adequately cover the whole photon energy range. With optimized spot size on the sample and small pixel detector the energy resolution can be better than 40 meV (90 meV) at any photon energy below 1000 eV with the high-resolution (high-transmission) grating. At the SCS instrument of the European XFEL the spectrometer can be easily positioned thanks to air pads on a high-quality floor, allowing the scattering angle to be continuously adjusted over the 65-145° range. It can be coupled to two different sample interaction chambers, one for liquid jets and one for solids, each state-of-the-art equipped and compatible for optical laser pumping in collinear geometry. The measured performances, in terms of energy resolution and count rate on the detector, closely match design expectations. The Heisenberg RIXS instrument has been open to public users since the summer of 2022.

共振非弹性x射线散射(RIXS)是一种理想的x射线光谱学方法,可以将能量和时间的组合分辨率推向傅里叶变换的极限,因为它不受岩心-孔寿命能量展宽的影响。此外,在泵浦-探针实验中,相同的岩心-孔寿命使得相互作用时间非常短。RIXS非常需要光子,因此它从欧洲XFEL等高重复率脉冲x射线源中获得了很大的优势。Heisenberg RIXS仪器是专为软x射线范围的RIXS实验而设计的,其能量分辨率接近傅里叶极限和海森堡极限。它是基于一个可变线距的球面光栅和一个位置敏感的二维探测器。最初,安装了两个光栅以充分覆盖整个光子能量范围。通过优化样品光斑尺寸和小像素探测器,高分辨率(高透射)光栅在1000 eV以下的任何光子能量下,能量分辨率均优于40 meV (90 meV)。在欧洲XFEL的SCS仪器中,由于高质量地板上的空气垫,光谱仪可以很容易地定位,允许散射角在65-145°范围内连续调整。它可以耦合到两个不同的样品相互作用室,一个用于液体射流,一个用于固体,每个最先进的装备和兼容的共线几何光学激光泵浦。在探测器的能量分辨率和计数率方面,测量的性能与设计预期非常吻合。海森堡RIXS仪器从2022年夏天开始向公众开放。
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引用次数: 0
PGMweb: an online tool for visualizing the X-ray beam path through plane grating monochromators. 通过平面光栅单色器可视化x射线光束路径的在线工具。
IF 2.5 3区 物理与天体物理 Pub Date : 2025-01-01 DOI: 10.1107/S1600577524011603
Patrick Yuheng Wang, Murilo Bazan da Silva, Matthew Hand, Hongchang Wang, Peter Chang, Victoria Beilsten-Edmands, Timur K Kim, Tien Lin Lee, Kawal Sawhney, Andrew C Walters

We present here a newly developed software tool (called PGMweb) for computing and simulating the X-ray beam path through a plane grating monochromator (PGM), a key component in soft X-ray beamlines at modern synchrotron and free-electron laser facilities. A historical overview of the development of PGMs is presented, with special attention dedicated to the collimated PGM optical scheme found at several X-ray facilities worldwide. The analytical expressions that fully describe the geometry of a PGM are derived and have been implemented as functions in a Python library (pyplanemono). PGMweb is distributed as a web-based application that can be run in any modern browser without installation, making its use very straightforward for X-ray beamline designers and beamline scientists alike.

本文介绍了一个新开发的软件工具(称为PGMweb),用于计算和模拟通过平面光栅单色器(PGM)的x射线光束路径,PGM是现代同步加速器和自由电子激光设备中软x射线光束线的关键部件。介绍了PGM发展的历史概况,特别关注了在世界上几个x射线设施中发现的准直PGM光学方案。完整描述PGM几何形状的解析表达式被推导出来,并在Python库(pyplanemono)中作为函数实现。PGMweb是一个基于web的应用程序,可以在任何现代浏览器中运行而无需安装,这使得x射线光束线设计师和光束线科学家都可以非常直接地使用它。
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引用次数: 0
Accurate measurements of slice electron beam parameters at the undulator in seeded free-electron lasers. 精确测量种子自由电子激光器中起爆器上的切片电子束参数。
IF 2.5 3区 物理与天体物理 Pub Date : 2025-01-01 DOI: 10.1107/S1600577524011585
Enrico Allaria, Paolo Cinquegrana, Miltcho B Danailov, Eugenio Ferrari, Fabian Pannek, Giuseppe Penco, Eleonore Roussel, Carlo Spezzani

The operation of modern free-electron lasers (FELs) necessitates precise knowledge of electron beam properties at the undulator to ensure the level of control required by increasingly demanding experiments. In seeded FELs, where only electrons interacting with the seed laser contribute to the process, it is crucial to determine the local values of these properties. We present a novel method, based on accurate modeling of the FEL process in high-gain harmonic generation, to accurately retrieve the electron beam slice energy spread, current and laser-induced energy modulation. Understanding these values is essential for enabling advanced FEL schemes and optimally setting advanced seeding schemes such as echo-enabled harmonic generation. We describe the method and provide an experimental application to the FERMI FEL-1, where a slice energy spread in the range 40-100 keV with a few keV accuracy is measured.

现代自由电子激光器(FELs)的操作需要精确了解电子束在波动器上的特性,以确保日益苛刻的实验所需的控制水平。在种子激光器中,只有与种子激光器相互作用的电子参与了这一过程,因此确定这些特性的局部值是至关重要的。本文提出了一种新的方法,在对自由电子激光器高增益谐波产生过程进行精确建模的基础上,精确地提取电子束切片能量扩散、电流和激光诱导的能量调制。了解这些值对于启用先进的FEL方案和优化设置先进的播种方案(如启用回声的谐波产生)至关重要。我们描述了该方法并提供了FERMI FEL-1的实验应用,在该实验中测量了40-100 keV范围内的切片能量分布,精度为几keV。
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引用次数: 0
Shedding light on biochemical changes in single neuron-like pheochromocytoma cells following exposure to synchrotron sourced terahertz radiation using synchrotron source Fourier transform infrared microspectroscopy. 利用同步辐射源傅立叶变换红外显微光谱技术,揭示单个神经元样嗜铬细胞瘤细胞暴露于同步辐射源太赫兹辐射后的生化变化。
IF 2.5 3区 物理与天体物理 Pub Date : 2025-01-01 DOI: 10.1107/S1600577524010944
Palalle G Tharushi Perera, Jitraporn Vongsvivut, Denver Linklater, Zoltan Vilagosh, Dominique Appadoo, The Hong Phong Nguyen, Mark J Tobin, Rodney Croft, Elena P Ivanova

Synchrotron sourced Fourier transform infrared (SS FTIR) microspectroscopy was employed to investigate the biological effects on the neuron-like pheochromocytoma (PC 12) cells after exposure to synchrotron sourced terahertz (SS THz) radiation. Over 10 min of exposure, the PC 12 cells received a total energy of 600 J m2, with a total incident power density of ∼1.0 W m-2 (0.10 mW cm-2) at the beam extraction port (BEP) of the THz beamline at the Australian Synchrotron. To investigate the metabolic response of PC 12 cells after synchrotron THz radiation exposure, we utilized the FTIR microscope at the Infrared Microspectroscopy IRM beamline, which offers high photon flux and diffraction-limited spatial resolution enabling the detection of functional group variations in biological molecules at a single-cell level. Principal component analysis (PCA) based on the SS FTIR spectral data revealed a distinct separation of SS THz-exposed and control (non-exposed) cells. According to the PCA loadings, the key changes in the exposed cells involved lipid and protein compositions as indicated by the stretching vibrations of CH2/CH3 groups and amide I/II bands, respectively. An increase in lipids, such as cholesterol, or notable changes in their compositions and in some protein secondary structures were observed in the SS THz-exposed cells. The PCA analysis further suggests that PC 12 cells might maintain cell membrane stability after SS THz irradiation through higher volumes of cholesterol and cell morphology via regulation of the synthesis of cytoskeleton proteins such as actin-related proteins. The outcome of this study re-emphasized the exceptional SS FTIR capability to perform single-cell analysis directly, providing (i) unique biological information on cell variability within the population as well as between different groups, and (ii) evidence of molecular changes in the exposed cells that could lead to a deeper understanding of the effect of THz exposure at a single-cell level.

采用同步源傅里叶变换红外(SS FTIR)微光谱学研究了同步源太赫兹(SS THz)辐射对神经元样嗜铬细胞瘤(pc12)细胞的生物学效应。在10分钟的暴露中,pc12电池在澳大利亚同步加速器的太赫兹光束线的光束提取口(BEP)接收到的总能量为600 J m2,总入射功率密度为~ 1.0 W m-2 (0.10 mW cm-2)。为了研究同步太赫兹辐射暴露后pc12细胞的代谢响应,我们利用红外微光谱IRM光束线下的FTIR显微镜,该显微镜提供了高光子通量和衍射有限的空间分辨率,能够在单细胞水平上检测生物分子中官能团的变化。基于SS FTIR光谱数据的主成分分析(PCA)显示SS太赫兹暴露细胞和对照(非暴露)细胞有明显的分离。根据PCA加载,暴露细胞的主要变化包括脂质和蛋白质组成,分别由CH2/CH3基团和酰胺I/II带的拉伸振动表明。在SS太赫兹暴露的细胞中观察到脂质(如胆固醇)的增加,或其组成和某些蛋白质二级结构的显著变化。PCA分析进一步表明,在SS太赫兹辐射后,pc12细胞可能通过调节细胞骨架蛋白(如肌动蛋白相关蛋白)的合成,通过增加胆固醇含量和细胞形态来维持细胞膜稳定性。这项研究的结果再次强调了SS FTIR直接进行单细胞分析的特殊能力,提供了(i)关于群体内以及不同群体之间细胞变异性的独特生物学信息,以及(ii)暴露细胞中分子变化的证据,这可能导致对单细胞水平上太赫兹暴露的影响有更深的了解。
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引用次数: 0
Visualization of four-dimensional X-ray absorption fine structure data using a virtual reality system. 利用虚拟现实系统实现四维x射线吸收精细结构数据的可视化。
IF 2.5 3区 物理与天体物理 Pub Date : 2025-01-01 DOI: 10.1107/S1600577524011226
Haruo Igarashi, Daiki Kido, Yutaka Ishii, Yasuhiro Niwa, Atsushi Okamoto, Masao Kimura

X-ray spectromicroscopy is extensively utilized for nondestructive mapping of chemical states in materials. However, understanding and analyzing the geometric and topological aspects of such data pose challenges due to their representation in 4D space, encompassing (x, y, z) coordinates along with the energy (E) axis and often extending to 5D space with the inclusion of time (t) or reaction degree. In this study, we addressed this challenge by developing a new approach and introducing a device named `4D-XASView', specifically designed for visualizing X-ray absorption fine structures (XAFS) data in 4D (comprising 3D space and energy), through a multi-projection system, within the virtual reality (VR) environment. As a test case for the new system, X-ray spectromicroscopy measurements were conducted on a specimen prepared from serpentinized harzburgite sourced from the upper mantle section of the Oman ophiolite. Our 4D-XASView facilitates the visualization and analysis of the geometric and topological aspects of the data using VR goggles, enabling detailed exploration of microstructures via rotation and zooming functionalities. This capability allows us to extract XAFS spectral data by selecting specific positions and regions, thereby aiding in the identification of `trigger sites' (magnetite in serpentine), which are characteristic locations within materials that substantially influence the macroscopic propagation of reactions. Our methodology establishes a new platform for analyzing 4D or 5D XAFS data that has applicability potential in various other multidimensional datasets, including microstructures coupled with spectroscopy and diffraction data.

x射线光谱显微镜广泛用于材料化学状态的无损测绘。然而,理解和分析这些数据的几何和拓扑方面带来了挑战,因为它们在四维空间中表示,包括(x, y, z)坐标以及能量(E)轴,并且经常扩展到包含时间(t)或反应度的5D空间。在这项研究中,我们通过开发一种新方法和引入一种名为“4D- xasview”的设备来解决这一挑战,该设备专门设计用于在虚拟现实(VR)环境中通过多投影系统在4D(包括3D空间和能量)中可视化x射线吸收精细结构(XAFS)数据。作为新系统的测试用例,x射线光谱显微镜测量了来自阿曼蛇绿岩上地幔部分的蛇纹石化辉锌矿制备的样品。我们的4D-XASView便于使用VR护目镜对数据的几何和拓扑方面进行可视化和分析,通过旋转和缩放功能对微结构进行详细探索。这种能力使我们能够通过选择特定的位置和区域提取XAFS光谱数据,从而帮助识别“触发位点”(蛇纹石中的磁铁矿),这些位点是材料中的特征位置,对反应的宏观传播有很大影响。我们的方法建立了一个分析4D或5D XAFS数据的新平台,该平台具有适用于各种其他多维数据集的潜力,包括微观结构与光谱和衍射数据。
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引用次数: 0
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Journal of Synchrotron Radiation
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