利用高分辨率滤波背投影重建模拟肝转移灶的深度 CT 特征。

IF 3.2 4区 计算机科学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Visual Computing for Industry Biomedicine and Art Pub Date : 2024-06-11 DOI:10.1186/s42492-024-00161-y
Christopher Wiedeman, Peter Lorraine, Ge Wang, Richard Do, Amber Simpson, Jacob Peoples, Bruno De Man
{"title":"利用高分辨率滤波背投影重建模拟肝转移灶的深度 CT 特征。","authors":"Christopher Wiedeman, Peter Lorraine, Ge Wang, Richard Do, Amber Simpson, Jacob Peoples, Bruno De Man","doi":"10.1186/s42492-024-00161-y","DOIUrl":null,"url":null,"abstract":"<p><p>Early diagnosis and accurate prognosis of colorectal cancer is critical for determining optimal treatment plans and maximizing patient outcomes, especially as the disease progresses into liver metastases. Computed tomography (CT) is a frontline tool for this task; however, the preservation of predictive radiomic features is highly dependent on the scanning protocol and reconstruction algorithm. We hypothesized that image reconstruction with a high-frequency kernel could result in a better characterization of liver metastases features via deep neural networks. This kernel produces images that appear noisier but preserve more sinogram information. A simulation pipeline was developed to study the effects of imaging parameters on the ability to characterize the features of liver metastases. This pipeline utilizes a fractal approach to generate a diverse population of shapes representing virtual metastases, and then it superimposes them on a realistic CT liver region to perform a virtual CT scan using CatSim. Datasets of 10,000 liver metastases were generated, scanned, and reconstructed using either standard or high-frequency kernels. These data were used to train and validate deep neural networks to recover crafted metastases characteristics, such as internal heterogeneity, edge sharpness, and edge fractal dimension. In the absence of noise, models scored, on average, 12.2% ( <math><mrow><mi>α</mi> <mo>=</mo> <mn>0.012</mn></mrow> </math> ) and 7.5% ( <math><mrow><mi>α</mi> <mo>=</mo> <mn>0.049</mn> <mo>)</mo></mrow> </math> lower squared error for characterizing edge sharpness and fractal dimension, respectively, when using high-frequency reconstructions compared to standard. However, the differences in performance were statistically insignificant when a typical level of CT noise was simulated in the clinical scan. Our results suggest that high-frequency reconstruction kernels can better preserve information for downstream artificial intelligence-based radiomic characterization, provided that noise is limited. Future work should investigate the information-preserving kernels in datasets with clinical labels.</p>","PeriodicalId":29931,"journal":{"name":"Visual Computing for Industry Biomedicine and Art","volume":null,"pages":null},"PeriodicalIF":3.2000,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11166620/pdf/","citationCount":"0","resultStr":"{\"title\":\"Simulated deep CT characterization of liver metastases with high-resolution filtered back projection reconstruction.\",\"authors\":\"Christopher Wiedeman, Peter Lorraine, Ge Wang, Richard Do, Amber Simpson, Jacob Peoples, Bruno De Man\",\"doi\":\"10.1186/s42492-024-00161-y\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Early diagnosis and accurate prognosis of colorectal cancer is critical for determining optimal treatment plans and maximizing patient outcomes, especially as the disease progresses into liver metastases. Computed tomography (CT) is a frontline tool for this task; however, the preservation of predictive radiomic features is highly dependent on the scanning protocol and reconstruction algorithm. We hypothesized that image reconstruction with a high-frequency kernel could result in a better characterization of liver metastases features via deep neural networks. This kernel produces images that appear noisier but preserve more sinogram information. A simulation pipeline was developed to study the effects of imaging parameters on the ability to characterize the features of liver metastases. This pipeline utilizes a fractal approach to generate a diverse population of shapes representing virtual metastases, and then it superimposes them on a realistic CT liver region to perform a virtual CT scan using CatSim. Datasets of 10,000 liver metastases were generated, scanned, and reconstructed using either standard or high-frequency kernels. These data were used to train and validate deep neural networks to recover crafted metastases characteristics, such as internal heterogeneity, edge sharpness, and edge fractal dimension. In the absence of noise, models scored, on average, 12.2% ( <math><mrow><mi>α</mi> <mo>=</mo> <mn>0.012</mn></mrow> </math> ) and 7.5% ( <math><mrow><mi>α</mi> <mo>=</mo> <mn>0.049</mn> <mo>)</mo></mrow> </math> lower squared error for characterizing edge sharpness and fractal dimension, respectively, when using high-frequency reconstructions compared to standard. However, the differences in performance were statistically insignificant when a typical level of CT noise was simulated in the clinical scan. Our results suggest that high-frequency reconstruction kernels can better preserve information for downstream artificial intelligence-based radiomic characterization, provided that noise is limited. Future work should investigate the information-preserving kernels in datasets with clinical labels.</p>\",\"PeriodicalId\":29931,\"journal\":{\"name\":\"Visual Computing for Industry Biomedicine and Art\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":3.2000,\"publicationDate\":\"2024-06-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11166620/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Visual Computing for Industry Biomedicine and Art\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://doi.org/10.1186/s42492-024-00161-y\",\"RegionNum\":4,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Visual Computing for Industry Biomedicine and Art","FirstCategoryId":"94","ListUrlMain":"https://doi.org/10.1186/s42492-024-00161-y","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0

摘要

结直肠癌的早期诊断和准确预后对于确定最佳治疗方案和最大限度地提高患者预后至关重要,尤其是当病情发展到肝转移时。计算机断层扫描(CT)是完成这一任务的前沿工具;然而,预测性放射学特征的保留在很大程度上取决于扫描方案和重建算法。我们假设,使用高频核进行图像重建可以通过深度神经网络更好地描述肝转移灶的特征。这种核产生的图像看起来更噪点,但保留了更多的正弦信息。为了研究成像参数对肝转移特征描述能力的影响,我们开发了一个模拟管道。该流水线利用分形方法生成代表虚拟转移灶的各种形状,然后将它们叠加到真实的 CT 肝区上,利用 CatSim 进行虚拟 CT 扫描。使用标准核或高频核生成、扫描和重建了 10,000 个肝转移灶数据集。这些数据用于训练和验证深度神经网络,以恢复精心制作的转移瘤特征,如内部异质性、边缘锐利度和边缘分形维度。在没有噪声的情况下,与标准模型相比,使用高频重建时,模型在表征边缘锐利度和分形维度方面的平方误差平均分别降低了 12.2% ( α = 0.012 ) 和 7.5% ( α = 0.049 ) 。然而,在临床扫描中模拟典型的 CT 噪声水平时,性能差异在统计学上并不显著。我们的研究结果表明,如果噪音有限,高频重建核可以更好地保留信息,用于基于人工智能的下游放射学特征描述。未来的工作应研究带有临床标签的数据集中的信息保存核。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Simulated deep CT characterization of liver metastases with high-resolution filtered back projection reconstruction.

Early diagnosis and accurate prognosis of colorectal cancer is critical for determining optimal treatment plans and maximizing patient outcomes, especially as the disease progresses into liver metastases. Computed tomography (CT) is a frontline tool for this task; however, the preservation of predictive radiomic features is highly dependent on the scanning protocol and reconstruction algorithm. We hypothesized that image reconstruction with a high-frequency kernel could result in a better characterization of liver metastases features via deep neural networks. This kernel produces images that appear noisier but preserve more sinogram information. A simulation pipeline was developed to study the effects of imaging parameters on the ability to characterize the features of liver metastases. This pipeline utilizes a fractal approach to generate a diverse population of shapes representing virtual metastases, and then it superimposes them on a realistic CT liver region to perform a virtual CT scan using CatSim. Datasets of 10,000 liver metastases were generated, scanned, and reconstructed using either standard or high-frequency kernels. These data were used to train and validate deep neural networks to recover crafted metastases characteristics, such as internal heterogeneity, edge sharpness, and edge fractal dimension. In the absence of noise, models scored, on average, 12.2% ( α = 0.012 ) and 7.5% ( α = 0.049 ) lower squared error for characterizing edge sharpness and fractal dimension, respectively, when using high-frequency reconstructions compared to standard. However, the differences in performance were statistically insignificant when a typical level of CT noise was simulated in the clinical scan. Our results suggest that high-frequency reconstruction kernels can better preserve information for downstream artificial intelligence-based radiomic characterization, provided that noise is limited. Future work should investigate the information-preserving kernels in datasets with clinical labels.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
5.60
自引率
0.00%
发文量
0
期刊最新文献
A study on the influence of situations on personal avatar characteristics. Noise suppression in photon-counting computed tomography using unsupervised Poisson flow generative models. Machine learning approach for the prediction of macrosomia. Medical image registration and its application in retinal images: a review. IQAGPT: computed tomography image quality assessment with vision-language and ChatGPT models.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1