推进神经肿瘤学的精准诊断:用于 IDH 野生型胶质母细胞瘤数据驱动的个性化生存预测的机器学习模型

IF 3.7 Q1 CLINICAL NEUROLOGY Neuro-oncology advances Pub Date : 2024-06-11 DOI:10.1093/noajnl/vdae096
Mert Karabacak, Pemla Jagtiani, L. Di, Ashish H Shah, Ricardo J Komotar, Konstantinos Margetis
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引用次数: 0

摘要

尽管采用了标准疗法,但胶质母细胞瘤(GBM)的预后仍然不容乐观。虽然已建立了人群生存统计数据,但生成个体化预后仍具有挑战性。我们的目标是开发机器学习(ML)模型,为 GBM 患者生成个性化的生存预测,以提高预后效果。 我们分析了国家癌症数据库(NCDB)中组织学确诊的IDH-野生型GBM成人患者。使用 TabPFN、TabNet、XGBoost、LightGBM 和随机森林算法开发了 ML 模型,用于预测诊断后 6、12、18 和 24 个月的死亡率。为了提高模型的可解释性,采用了 SHapley Additive exPlanations (SHAP) 算法。模型主要使用接收者操作特征下面积(AUROC)值进行评估,每个结果的 AUROC 值最高的表现最佳的模型将被部署到为个性化预测而创建的网络应用程序中。 从 NCDB 共检索到 7537 名患者。性能评估显示,每个结果的最高性能模型都是使用 TabPFN 算法建立的。TabPFN 模型预测 6 个月、12 个月、18 个月和 24 个月死亡率的平均 AUROC 分别为 0.836、0.78、0.732 和 0.724。 本研究建立了针对个体患者的 ML 模型,以加强对 GBM 预后的预测。未来的工作应侧重于外部验证和新数据出现时的动态更新。
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Advancing Precision Prognostication in Neuro-Oncology: Machine Learning Models for Data-Driven Personalized Survival Predictions in IDH-Wildtype Glioblastoma
Glioblastoma (GBM) remains associated with a dismal prognosis despite standard therapies. While population-level survival statistics are established, generating individualized prognosis remains challenging. We aim to develop machine learning (ML) models that generate personalized survival predictions for GBM patients to enhance prognostication. Adult patients with histologically confirmed IDH-wildtype GBM from the National Cancer Database (NCDB) were analyzed. ML models were developed with TabPFN, TabNet, XGBoost, LightGBM, and Random Forest algorithms to predict mortality at 6, 12, 18, and 24 months post-diagnosis. SHapley Additive exPlanations (SHAP) were employed to enhance the interpretability of the models. Models were primarily evaluated using the area under the receiver operating characteristic (AUROC) values, and the top-performing models indicated by the highest AUROCs for each outcome were deployed in a web application that was created for individualized predictions. A total of 7,537 patients were retrieved from the NCDB. Performance evaluation revealed the top-performing models for each outcome were built using the TabPFN algorithm. The TabPFN models yielded mean AUROCs of 0.836, 0.78, 0.732, and 0.724 in predicting 6-, 12-, 18-, and 24-month mortality, respectively. This study establishes ML models tailored to individual patients to enhance GBM prognostication. Future work should focus on external validation and dynamic updating as new data emerge.
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期刊最新文献
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