利用神经网络进行微纳目标预测的网络服务

M. Aristarkhov, A. Dergilev, A. Potapova, P. Ivanov-Rostovtsev, Yuriy Orlov
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摘要

要寻找 microRNA 靶基因,就必须开发新型软件和网络服务。microRNA 是一种非编码 RNA 短分子,在新陈代谢调控、植物对环境压力的反应以及基因表达方面发挥着关键作用。深入了解 microRNA 的功能并研究其靶基因可以推动药物开发并应对生物技术挑战。然而,研究和鉴定基因组中的 microRNA 靶标存在技术障碍。microRNA 分子可能与其 mRNA 靶点不完全互补。这些分子要么会导致 mRNA 降解,要么会抑制翻译,而这一过程可能是在目标不完全互补的情况下进行的。因此,仅根据互补性原则来划分靶标缺乏明确性。此外,一个 microRNA 分子可以同时对应多个靶基因。解决方案需要利用大量数据集、机器学习技术和神经网络。在生物信息学领域,神经网络具有多种功能,包括生物医学数据分析、诊断、预测、分类和核苷酸序列分割。目前,通过机器学习方法寻找和预测 microRNA 靶点的研究正在蓬勃发展。针对这一任务对当代神经网络进行了比较评估。我们创建了一个神经网络驱动的 microRNA 预测网络服务。该服务的服务器使用 Python 编程语言和 Flask 库开发。采用了基于深度学习的 Mitar 神经网络。该网络在预测 microRNA 目标方面表现出更高的精确度。我们探讨了 miRNA 预测在基因表达分析中的应用。要提高所开发计算机系统的效率并扩大其功能,持续的研究工作势在必行。
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WEB-SERVICES FOR MICRORNA TARGET PREDICTION USING NEURAL NETWORKS
The pursuit of microRNA target genes necessitates the creation of novel software and web services. MicroRNAs, abbreviated as short non-coding RNA molecules, hold a pivotal role in metabolic regulation, plant responses to environmental stress, and gene expression. Gaining insights into microRNA functions and investigating their target genes can advance drug development and address biotechnological challenges. However, the study and identification of microRNA targets within the genome present technical obstacles. MicroRNA molecules may not exhibit complete complementarity with their mRNA targets. These molecules either contribute to mRNA degradation or inhibit translation, and this process can transpire without full target complementarity. Consequently, the delineation of targets solely based on the principle of complementarity lacks unequivocal clarity. Moreover, a single microRNA molecule can correspond to multiple target genes simultaneously. The solution entails harnessing substantial datasets, employing machine learning techniques, and leveraging neural networks. In bioinformatics, neural networks serve a variety of functions, encompassing the analysis of biomedical data, diagnostics, prediction, classification, and nucleotide sequence segmentation. The pursuit and anticipation of microRNA targets through machine learning methods are currently undergoing vigorous development. A comparative assessment of contemporary neural networks for this task has been executed. A neural network-driven web service for microRNA prediction has been created. The server aspect of the service was developed using the Python programming language and the Flask library. The Mitar neural network, founded on deep learning, was employed. This network demonstrates heightened precision in predicting microRNA targets. We deliberate on the applications of miRNA prediction in gene expression analysis. Sustained research efforts are imperative to enhance the efficiency and broaden the capabilities of the developed computer system.
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STATISTICAL EVALUATION FOR BACTERIA ELECTRO-STIMULATION USING THE DUNNETT METHOD FOR A MICROBIAL FUEL CELL CRITICAL AND LETHAL OXYGEN CONCENTRATIONS FOR SOME BLACK SEA FISH (SHORT REVIEW) WEB-SERVICES FOR MICRORNA TARGET PREDICTION USING NEURAL NETWORKS RECONSTRUCTION OF GENE AND ASSOCIATIVE NETWORKS OF DISEASES TO SEARCH FOR TARGET GENES GENERALIZATION OF THE THERMOKINETIC OREGONATOR MODEL
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