渗流分析显示,受力亚细胞结构的形成和解体之间出现了不对称反应。

IF 1.5 4区 生物学 Q4 CELL BIOLOGY Integrative Biology Pub Date : 2024-01-23 DOI:10.1093/intbio/zyae012
Yuika Ueda, Daiki Matsunaga, Shinji Deguchi
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引用次数: 0

摘要

细胞通过调节肌动蛋白丝(AF)的排列动态重塑其内部结构。在这一过程中,单个肌动蛋白丝表现出随机行为,而不知道它们要创建或瓦解的宏观高阶结构,但这种随机过程驱动亚细胞结构重塑的机制仍未完全清楚。在这里,我们运用渗滤理论来探讨仅与相邻AF相互作用而不识别整体构型的AF如何能在特定位置创建被称为应力纤维(SF)的实质性结构。我们确定了发生细胞张力平衡的 AFs 的相互作用概率,这是维持细胞内张力的基本特性。我们的研究表明,应力纤维的形成所需的时间会因预先存在的肌动蛋白网的增加而缩短,而应力纤维的解体则与肌动蛋白网的存在无关,这表明张力承载元素和非承载元素的共存使细胞能够根据瞬时的环境变化迅速过渡到新的状态。通过对机械信号传输的内在本质进行研究,我们通过最小模型分析阐明了在实际细胞中持续观察到的这种创造与解体之间不对称现象的起源。具体来说,与涉及生化通讯的对称情况不同,感知环境变化的物理通讯是通过受张力作用的 AF 促进的,而与受张力作用结构分离的其他自由 AF 则表现出随机行为。因此,数值模型和最小模型都证明了细胞内渗滤的本质,在细胞水平上观察到的宏观不对称性并非来自单个分子相互作用概率的微观不对称性,而仅仅是机械信号传输方式的结果。这些结果为了解具有和不具有张力承受能力的不同亚细胞结构之间相互影响的作用提供了新的视角。洞察力:细胞不断重塑其内部元素或结构蛋白,以应对环境变化。尽管单个结构蛋白的行为是随机的,它们对自己要创建或分解的更大的亚细胞结构缺乏认识,但这种自组装过程还是以某种方式发生了,从而实现了对环境的适应。在这里,我们通过渗流模拟和最小模型分析证明,亚细胞结构的创建和解体之间存在不对称反应,这有助于环境适应。尽管单个蛋白质的随机行为本身并不具有非对称特征,但这种非对称性本质上源于通过结构蛋白传递机械信号的性质,即细胞内张力介导的信息交流。
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Asymmetric response emerges between creation and disintegration of force-bearing subcellular structures as revealed by percolation analysis.

Cells dynamically remodel their internal structures by modulating the arrangement of actin filaments (AFs). In this process, individual AFs exhibit stochastic behavior without knowing the macroscopic higher-order structures they are meant to create or disintegrate, but the mechanism allowing for such stochastic process-driven remodeling of subcellular structures remains incompletely understood. Here we employ percolation theory to explore how AFs interacting only with neighboring ones without recognizing the overall configuration can nonetheless create a substantial structure referred to as stress fibers (SFs) at particular locations. We determined the interaction probabilities of AFs undergoing cellular tensional homeostasis, a fundamental property maintaining intracellular tension. We showed that the duration required for the creation of SFs is shortened by the increased amount of preexisting actin meshwork, while the disintegration occurs independently of the presence of actin meshwork, suggesting that the coexistence of tension-bearing and non-bearing elements allows cells to promptly transition to new states in accordance with transient environmental changes. The origin of this asymmetry between creation and disintegration, consistently observed in actual cells, is elucidated through a minimal model analysis by examining the intrinsic nature of mechano-signal transmission. Specifically, unlike the symmetric case involving biochemical communication, physical communication to sense environmental changes is facilitated via AFs under tension, while other free AFs dissociated from tension-bearing structures exhibit stochastic behavior. Thus, both the numerical and minimal models demonstrate the essence of intracellular percolation, in which macroscopic asymmetry observed at the cellular level emerges not from microscopic asymmetry in the interaction probabilities of individual molecules, but rather only as a consequence of the manner of the mechano-signal transmission. These results provide novel insights into the role of the mutual interplay between distinct subcellular structures with and without tension-bearing capability. Insight: Cells continuously remodel their internal elements or structural proteins in response to environmental changes. Despite the stochastic behavior of individual structural proteins, which lack awareness of the larger subcellular structures they are meant to create or disintegrate, this self-assembly process somehow occurs to enable adaptation to the environment. Here we demonstrated through percolation simulations and minimal model analyses that there is an asymmetry in the response between the creation and disintegration of subcellular structures, which can aid environmental adaptation. This asymmetry inherently arises from the nature of mechano-signal transmission through structural proteins, namely tension-mediated information exchange within cells, despite the stochastic behavior of individual proteins lacking asymmetric characters in themselves.

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来源期刊
Integrative Biology
Integrative Biology 生物-细胞生物学
CiteScore
4.90
自引率
0.00%
发文量
15
审稿时长
1 months
期刊介绍: Integrative Biology publishes original biological research based on innovative experimental and theoretical methodologies that answer biological questions. The journal is multi- and inter-disciplinary, calling upon expertise and technologies from the physical sciences, engineering, computation, imaging, and mathematics to address critical questions in biological systems. Research using experimental or computational quantitative technologies to characterise biological systems at the molecular, cellular, tissue and population levels is welcomed. Of particular interest are submissions contributing to quantitative understanding of how component properties at one level in the dimensional scale (nano to micro) determine system behaviour at a higher level of complexity. Studies of synthetic systems, whether used to elucidate fundamental principles of biological function or as the basis for novel applications are also of interest.
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