[基于放射组学和临床实验室指标的血吸虫病肝纤维化分级诊断模型的开发]。

Z Guo, J Shao, X Zou, Q Zhao, P Qian, W Wang, L Huang, J Xue, J Xu, K Yang, X Zhou, S Li
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引用次数: 0

摘要

目的研究基于B型超声图像和临床实验室指标建立血吸虫病所致肝纤维化分级诊断模型的可行性:采集2018年至2022年江西省都昌县第二人民医院收治的血吸虫病患者的超声图像和临床实验室检测数据。以2018年至2021年的患者影像学和临床实验室数据为训练集,以2022年的患者影像学和临床实验室数据为验证集,创建机器学习二元分类任务。使用ITK-SNAP软件对超声图像的特征进行标注,使用Python 3.7软件包和PyRadiomics工具包提取超声图像的特征。用t检验或曼-惠特尼U检验比较组间超声图像特征的差异,并用最小绝对收缩和选择算子(LASSO)回归算法选择关键成像特征。使用 Scikit-learn 软件库创建了四种机器学习模型,包括支持向量机(SVM)、随机森林(RF)、线性回归(LR)和极梯度提升(XGBoost)。用接收者操作特征曲线(ROC)筛选出最佳机器学习模型,并用SHAPLE Additive exPlanations(SHAP)方法筛选出机器学习模型中对超声图像分化特征贡献最大的特征:研究纳入了2019年至2022年491名血吸虫病患者的超声影像学数据和临床实验室检测数据,共获取了851个影像学特征和54个临床实验室指标。经过统计检验(t = -5.98 至 4.80,U = 6 550 至 20 994,P 值均小于 0.05)和 LASSO 回归筛选关键特征后,44 个特征或指标被纳入后续建模。基于临床实验室指标的 SVM 模型的训练集和验证集的 ROC 曲线下面积(AUC)分别为 0.763 和 0.611,基于放射组学的 SVM 模型的训练集和验证集的 ROC 曲线下面积(AUC)分别为 0.951 和 0.892,多模态 SVM 模型的训练集和验证集的 ROC 曲线下面积(AUC)分别为 0.960 和 0.913。机器学习模型中贡献最大的10个特征或指标包括2个临床实验室指标和8个放射组学特征:基于超声放射组学和临床实验室指标创建的多模态机器学习模型可用于血吸虫病肝纤维化的智能识别,并能有效提高单类数据模型的分类效果。
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[Development of a grading diagnostic model for schistosomiasis-induced liver fibrosis based on radiomics and clinical laboratory indicators].

Objective: To investigate the feasibility of developing a grading diagnostic model for schistosomiasis-induced liver fibrosis based on B-mode ultrasonographic images and clinical laboratory indicators.

Methods: Ultrasound images and clinical laboratory testing data were captured from schistosomiasis patients admitted to the Second People's Hospital of Duchang County, Jiangxi Province from 2018 to 2022. Patients with grade I schistosomiasis-induced liver fibrosis were enrolled in Group 1, and patients with grade II and III schistosomiasis-induced liver fibrosis were enrolled in Group 2. The machine learning binary classification tasks were created based on patients'radiomics and clinical laboratory data from 2018 to 2021 as the training set, and patients'radiomics and clinical laboratory data in 2022 as the validation set. The features of ultrasonographic images were labeled with the ITK-SNAP software, and the features of ultrasonographic images were extracted using the Python 3.7 package and PyRadiomics toolkit. The difference in the features of ultrasonographic images was compared between groups with t test or Mann-Whitney U test, and the key imaging features were selected with the least absolute shrinkage and selection operator (LASSO) regression algorithm. Four machine learning models were created using the Scikit-learn repository, including the support vector machine (SVM), random forest (RF), linear regression (LR) and extreme gradient boosting (XGBoost). The optimal machine learning model was screened with the receiver operating characteristic curve (ROC), and features with the greatest contributions to the differentiation features of ultrasound images in machine learning models with the SHapley Additive exPlanations (SHAP) method.

Results: The ultrasonographic imaging data and clinical laboratory testing data from 491 schistosomiasis patients from 2019 to 2022 were included in the study, and a total of 851 radiomics features and 54 clinical laboratory indicators were captured. Following statistical tests (t = -5.98 to 4.80, U = 6 550 to 20 994, all P values < 0.05) and screening of key features with LASSO regression, 44 features or indicators were included for the subsequent modeling. The areas under ROC curve (AUCs) were 0.763 and 0.611 for the training and validation sets of the SVM model based on clinical laboratory indicators, 0.951 and 0.892 for the training and validation sets of the SVM model based on radiomics, and 0.960 and 0.913 for the training and validation sets of the multimodal SVM model. The 10 greatest contributing features or indicators in machine learning models included 2 clinical laboratory indicators and 8 radiomics features.

Conclusions: The multimodal machine learning models created based on ultrasound-based radiomics and clinical laboratory indicators are feasible for intelligent identification of schistosomiasis-induced liver fibrosis, and are effective to improve the classification effect of one-class data models.

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来源期刊
中国血吸虫病防治杂志
中国血吸虫病防治杂志 Medicine-Medicine (all)
CiteScore
1.30
自引率
0.00%
发文量
7021
期刊介绍: Chinese Journal of Schistosomiasis Control (ISSN: 1005-6661, CN: 32-1374/R), founded in 1989, is a technical and scientific journal under the supervision of Jiangsu Provincial Health Commission and organised by Jiangsu Institute of Schistosomiasis Control. It is a scientific and technical journal under the supervision of Jiangsu Provincial Health Commission and sponsored by Jiangsu Institute of Schistosomiasis Prevention and Control. The journal carries out the policy of prevention-oriented, control-oriented, nationwide and grassroots, adheres to the tenet of scientific research service for the prevention and treatment of schistosomiasis and other parasitic diseases, and mainly publishes academic papers reflecting the latest achievements and dynamics of prevention and treatment of schistosomiasis and other parasitic diseases, scientific research and management, etc. The main columns are Guest Contributions, Experts‘ Commentary, Experts’ Perspectives, Experts' Forums, Theses, Prevention and Treatment Research, Experimental Research, The main columns include Guest Contributions, Expert Commentaries, Expert Perspectives, Expert Forums, Treatises, Prevention and Control Studies, Experimental Studies, Clinical Studies, Prevention and Control Experiences, Prevention and Control Management, Reviews, Case Reports, and Information, etc. The journal is a useful reference material for the professional and technical personnel of schistosomiasis and parasitic disease prevention and control research, management workers, and teachers and students of medical schools.    The journal is now included in important domestic databases, such as Chinese Core List (8th edition), China Science Citation Database (Core Edition), China Science and Technology Core Journals (Statistical Source Journals), and is also included in MEDLINE/PubMed, Scopus, EBSCO, Chemical Abstract, Embase, Zoological Record, JSTChina, Ulrichsweb, Western Pacific Region Index Medicus, CABI and other international authoritative databases.
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