[中国石斑鱼的分子追踪]。

L Duan, L Qu, Y Guo, W Gu, S Lü, Y Zhang, X Zhou
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Cytochrome c oxidase I (<i>COI</i>) and mitochondrial 16S ribosomal RNA (<i>16S rRNA</i>) genes were sampled using the above DNA templates, and the amplified products were sequenced. The <i>COI</i> and <i>16S rRNA</i> gene sequences were downloaded from GenBank, and the sampling sites were acquired. All <i>COI</i> and 1<i>6S rRNA</i> gene sequences were aligned and evolutionary trees of <i>B. straminea</i> were created based on <i>COI</i> and <i>16S rRNA</i> gene sequences to identify the genetic similarity and evolutionary relationship between <i>B. straminea</i> samples from China and South America.</p><p><strong>Results: </strong>A total of 60 <i>COI</i> gene sequences with a length of 529 bp and 3 haplotypes were obtained from <i>B. straminea</i> sampled from China. There were 165 <i>COI</i> gene sequences of <i>B. straminea</i> retrieved from GenBank, and following alignment with the above 60 gene sequences, a total of 33 haplotypes were obtained. 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引用次数: 0

摘要

目的调查中国疟原虫的来源,为评估曼氏血吸虫病传播风险和疟原虫防治提供依据:方法:选取中国深圳市观澜河、大沙河、深圳水库、魁永河上下游和新圳河为采样点。在每个采样点采集了 10 个画眉藻样本,并从画眉藻样本中提取了基因组 DNA。从南美洲巴西米纳斯吉拉斯州、帕拉州、联邦区、伯南布哥州和圣保罗州的 5 个采样点采集了 15 个 B. straminea 样本,并从中提取了基因组 DNA。利用上述 DNA 模板对细胞色素 c 氧化酶 I(COI)和线粒体 16S 核糖体 RNA(16S rRNA)基因进行了采样,并对扩增产物进行了测序。从 GenBank 下载了 COI 和 16S rRNA 基因序列,并获取了取样位点。对所有 COI 和 16S rRNA 基因序列进行比对,并根据 COI 和 16S rRNA 基因序列建立 B. straminea 的进化树,以确定中国和南美洲 B. straminea 样本之间的遗传相似性和进化关系:结果:共获得了 60 个 COI 基因序列,长度为 529 bp,3 个单倍型。从 GenBank 中检索到 165 条 B. straminea 的 COI 基因序列,与上述 60 条基因序列比对后,共得到 33 个单倍型。系统进化分析表明,来自中国的三个单倍型被聚为一个支系,其中单倍型 China11 与从 GenBank 中检索到的三个来自巴西的 B. straminea 样品属于同一单倍型。地理进化分析表明,巴西东部沿海三个采样点的 B. straminea 样品与 China11 具有相同的单倍型,另外两个采样点的 B. straminea 样品与 China11 具有密切的遗传亲缘关系。从中国的 B. straminea 共扩增出 60 个长度约为 322 bp 的 16S rDNA 基因序列,并确定了 2 个单倍型。从 GenBank 中获取了 70 个 B. straminea 的 16S rDNA 基因序列。系统进化分析表明,从中国采集的 Bomphalaria 蜗牛聚为一个支系,单倍型 China64 与来自巴西的单倍型 229BS 具有相同的单倍型。从 GenBank 中获取的巴西南部 25 个采样点的 49 个 B. straminea 的 16S rDNA 基因序列被纳入本分析,其中 3 个采样点的 B. straminea 与中国的 China64 具有相同的单倍型。基于 COI 和 16S rRNA 基因序列的地理进化分析表明,巴西东部沿海地区采样的 B. straminea 与中国采集的 Biomphalaria 螺类在两个基因片段序列上具有相同的单倍型:结论:中国田螺的特点是遗传多样性较低。中国田螺与巴西东部沿海地区田螺的遗传相似性较高,可能起源于巴西东部沿海地区。
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[Molecular tracing of Biomphalaria straminea in China].

Objective: To investigate the origin of Biomphalaria straminea in China, so as to provide insights into assessment of schistosomiasis mansoni transmission risk and B. straminea control.

Methods: Guanlan River, Dasha River, Shenzhen Reservoir, upper and lower reaches of Kuiyong River, and Xinzhen River in Shenzhen, China, were selected as sampling sites. Ten Biomphalaria samples were collected from each site, and genomic DNA was extracted from Biomphalaria samples. DNA samples were obtained from 15 B. straminea sampled from 5 sampling sites in Minas Gerais State, Pará State, Federal District, Pernambuco State, and Sao Paulo State in Brazil, South America. Cytochrome c oxidase I (COI) and mitochondrial 16S ribosomal RNA (16S rRNA) genes were sampled using the above DNA templates, and the amplified products were sequenced. The COI and 16S rRNA gene sequences were downloaded from GenBank, and the sampling sites were acquired. All COI and 16S rRNA gene sequences were aligned and evolutionary trees of B. straminea were created based on COI and 16S rRNA gene sequences to identify the genetic similarity and evolutionary relationship between B. straminea samples from China and South America.

Results: A total of 60 COI gene sequences with a length of 529 bp and 3 haplotypes were obtained from B. straminea sampled from China. There were 165 COI gene sequences of B. straminea retrieved from GenBank, and following alignment with the above 60 gene sequences, a total of 33 haplotypes were obtained. Phylogenetic analysis showed that the three haplotypes of B. straminea from China were clustered into one clade, among which the haplotype China11 and three B. straminea samples from Brazil retrieved from GenBank belonged to the same haplotype. Geographical evolution analysis showed that the B. straminea samples from three sampling sites along eastern coasts of Brazil had the same haplotype with China11, and B. straminea samples from other two sampling sites were closely, genetically related to China11. A total of 60 16S rDNA gene sequences with approximately 322 bp in length were amplified from B. straminea in China, with 2 haplotypes identified. A total of 70 16S rDNA gene sequences of B. straminea were captured from GenBank. Phylogenetic analysis showed that Biomphalaria snails collected from China were clustered into a clade, and the haplotype China64 and the haplotype 229BS from Brazil shared the same haplotype. The 49 16S rDNA gene sequences of B. straminea from 25 sampling sites in southern Brazil, which were captured from GenBank, were included in the present analysis, and the B. straminea from 3 sampling sites shared the same haplotype with China64 in China. Geographical evolution analysis based on COI and 16S rRNA gene sequences showed that B. straminea sampled from eastern coastal areas of Brazil shared the same haplotypes in two gene fragment sequences with Biomphalaria snails collected from China.

Conclusions: The Biomphalaria snails in China are characterized as B. straminea, which have a low genetic diversity. The Biomphalaria snails in China have a high genetic similarity with B. straminea sampled from eastern coastal areas of Brazil, which may have originated from the eastern coastal areas of Brazil.

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来源期刊
中国血吸虫病防治杂志
中国血吸虫病防治杂志 Medicine-Medicine (all)
CiteScore
1.30
自引率
0.00%
发文量
7021
期刊介绍: Chinese Journal of Schistosomiasis Control (ISSN: 1005-6661, CN: 32-1374/R), founded in 1989, is a technical and scientific journal under the supervision of Jiangsu Provincial Health Commission and organised by Jiangsu Institute of Schistosomiasis Control. It is a scientific and technical journal under the supervision of Jiangsu Provincial Health Commission and sponsored by Jiangsu Institute of Schistosomiasis Prevention and Control. The journal carries out the policy of prevention-oriented, control-oriented, nationwide and grassroots, adheres to the tenet of scientific research service for the prevention and treatment of schistosomiasis and other parasitic diseases, and mainly publishes academic papers reflecting the latest achievements and dynamics of prevention and treatment of schistosomiasis and other parasitic diseases, scientific research and management, etc. The main columns are Guest Contributions, Experts‘ Commentary, Experts’ Perspectives, Experts' Forums, Theses, Prevention and Treatment Research, Experimental Research, The main columns include Guest Contributions, Expert Commentaries, Expert Perspectives, Expert Forums, Treatises, Prevention and Control Studies, Experimental Studies, Clinical Studies, Prevention and Control Experiences, Prevention and Control Management, Reviews, Case Reports, and Information, etc. The journal is a useful reference material for the professional and technical personnel of schistosomiasis and parasitic disease prevention and control research, management workers, and teachers and students of medical schools.    The journal is now included in important domestic databases, such as Chinese Core List (8th edition), China Science Citation Database (Core Edition), China Science and Technology Core Journals (Statistical Source Journals), and is also included in MEDLINE/PubMed, Scopus, EBSCO, Chemical Abstract, Embase, Zoological Record, JSTChina, Ulrichsweb, Western Pacific Region Index Medicus, CABI and other international authoritative databases.
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