转录组和代谢组的综合分析揭示了拟南芥对缺氧环境的分子反应。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-07-04 DOI:10.1186/s40850-024-00206-y
Jinjin Li, Yun-E Tang, Bo Lv, Juan Wang, Zhi Wang, Qisheng Song
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引用次数: 0

摘要

在发生洪水或山体滑坡等自然灾害时,陆地生物可能会面临缺氧压力,这可能导致通常栖息在土壤中的生物不可避免地处于缺氧状态。伪尾柱虫经常栖息在土壤缝隙中,人们对其进行了广泛的研究,但有关其对缺氧应激反应的研究仍不清楚。因此,我们利用代谢组学和转录组学方法研究了低氧胁迫下稗草的适应策略。结果表明,在缺氧胁迫下,与能量和抗氧化剂有关的代谢物,如ATP、6-磷酸二葡萄糖、黄素腺嘌呤二核苷酸(FAD)和还原型L-谷胱甘肽等,都有显著的差异表达。柠檬酸(TCA)循环和氧化磷酸化等途径的表达量明显增加。转录组分析和相关评估还发现,与能量代谢相关的途径也明显增加,这表明稗草主要通过调节能量代谢和抗氧化相关物质来应对缺氧环境。
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Integrated transcriptome and metabolome analysis reveals the molecular responses of Pardosa pseudoannulata to hypoxic environments.

Terrestrial organisms are likely to face hypoxic stress during natural disasters such as floods or landslides, which can lead to inevitable hypoxic conditions for those commonly residing within soil. Pardosa pseudoannulata often inhabits soil crevices and has been extensively studied, yet research on its response to hypoxic stress remains unclear. Therefore, we investigated the adaptive strategies of Pardosa pseudoannulata under hypoxic stress using metabolomics and transcriptomics approaches. The results indicated that under hypoxic stress, metabolites related to energy and antioxidants such as ATP, D-glucose 6-phosphate, flavin adenine dinucleotide (FAD), and reduced L-glutathione were significantly differentially expressed. Pathways such as the citric acid (TCA) cycle and oxidative phosphorylation were significantly enriched. Transcriptome analysis and related assessments also revealed a significant enrichment of pathways associated with energy metabolism, suggesting that Pardosa pseudoannulata primarily copes with hypoxic environments by modulating energy metabolism and antioxidant-related substances.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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