二硫化血症与牙周炎的相关性:新见解和临床意义。

IF 2.2 4区 医学 Q2 DENTISTRY, ORAL SURGERY & MEDICINE Archives of oral biology Pub Date : 2024-07-02 DOI:10.1016/j.archoralbio.2024.106046
Yixin Fan , Wantong Liu , Le Qi , Qi Zhao , Sining Li , He Zou , Chen Kong , Zhiwei Li , Jiwei Ren , Zhihui Liu , Bowei Wang
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引用次数: 0

摘要

研究目的本研究旨在调查和预测与牙周炎二硫化相关的治疗药物:设计:从基因表达总库(GEO)数据库下载数据集GSE10334,用于训练最小绝对收缩和选择算子(LASSO)回归和支持向量机递归特征消除(SVM-RFE)算法,以识别牙周炎中与二硫化硫相关的基因。为验证结果,研究人员使用了GSE16134验证集、聚合酶链反应(PCR)和牙龈免疫荧光。进行了免疫浸润和相关性分析,并构建了竞争性内源性 RNA(ceRNA)网络。然后利用 DGIdb 数据库预测了有效的治疗药物,并利用分子对接验证了结合亲和力:结果:获得了与牙周炎二硫化相关的六个基因(SLC7A11、SLC3A2、RPN1、NCKAP1、LRPPRC 和 NDUFS1)。外部数据集和实验的验证结果与筛选结果一致。单基因GSEA分析主要富集于抗原提呈和免疫相关通路和功能。免疫浸润和相关性分析表明,这些基因与浆细胞、静止树突状细胞和活化NK细胞之间存在显著的调控关系。对 ceRNA 网络进行了可视化分析。与靶基因具有良好亲和力的 ME-344、NV-128 和 RILUZOLE 被确定为治疗牙周炎的有前途的药物:结论:SLC7A11、SLC3A2、RPN1、NCKAP1、LRPPRC 和 NDUFS1 是牙周炎中与二硫化相关的靶基因,ME-344、NV-128 和 RILUZOLE 是治疗牙周炎的有效药物。
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Correlation of disulfidptosis and periodontitis: New insights and clinical significance

Objectives

This study aims to investigate and predict the therapeutic agents associated with disulfidptosis in periodontitis.

Design

The dataset GSE10334 was downloaded from the Gene Expression Omnibus (GEO) database and used to train a least absolute shrinkage and selection operator (LASSO) regression and support vector machine recursive feature elimination (SVM–RFE) algorithm to identify genes associated with disulfidptosis in periodontitis. GSE16134 validation sets, polymerase chain reaction (PCR), and gingival immunofluorescence were used to verify the results.Single-gene Gene Set Enrichment Analysis (GSEA) was performed to explore the potential mechanisms and functions of the characterized genes. Immune infiltration and correlation analyses were performed, and competing endogenous RNA (ceRNA) networks were constructed. Effective therapeutic drugs were then predicted using the DGIdb database, and molecular docking was used to validate binding affinity.

Results

Six genes (SLC7A11, SLC3A2, RPN1, NCKAP1, LRPPRC, and NDUFS1) associated with disulfidptosis in periodontitis were obtained. Validation results from external datasets and experiments were consistent with the screening results. Single-gene GSEA analysis was mainly enriched for antigen presentation and immune-related pathways and functions.Immune infiltration and correlation analyses revealed significant regulatory relationships between these genes and plasma cells, resting dendritic cell, and activated NK cells. The ceRNA network was visualized. And ME-344, NV-128, and RILUZOLE, which have good affinity to target genes, were identified as promising agents for the treatment of periodontitis.

Conclusions

SLC7A11, SLC3A2, RPN1, NCKAP1, LRPPRC, and NDUFS1 are targets associated with disulfidptosis in periodontitis, and ME-344, NV-128, and RILUZOLE are promising agents for the treatment of periodontitis.

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来源期刊
Archives of oral biology
Archives of oral biology 医学-牙科与口腔外科
CiteScore
5.10
自引率
3.30%
发文量
177
审稿时长
26 days
期刊介绍: Archives of Oral Biology is an international journal which aims to publish papers of the highest scientific quality in the oral and craniofacial sciences. The journal is particularly interested in research which advances knowledge in the mechanisms of craniofacial development and disease, including: Cell and molecular biology Molecular genetics Immunology Pathogenesis Cellular microbiology Embryology Syndromology Forensic dentistry
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