复杂活性物质生命系统的恒温动力学理论模型十年。

IF 13.7 1区 生物学 Q1 BIOLOGY Physics of Life Reviews Pub Date : 2024-07-06 DOI:10.1016/j.plrev.2024.06.015
Carlo Bianca
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引用次数: 0

摘要

在过去的十年中,恒温动力学理论被提出作为活性物质复杂系统建模的一般范例,特别是在生物学中。恒温动力学理论的均质和非均质框架被用于模拟构成系统的元素(称为活性粒子)之间相互作用所产生的现象。功能子系统包含能够执行相同任务(称为活动)的异质活性粒子。活性物质生命系统通常在非平衡状态下运行;因此,为了调节粒子活性的波动,引入了数学恒温器。功能子系统的时间演化是通过引入保守和非保守相互作用来实现的,这些相互作用代表了活性粒子的活动-转换、自然诞生/死亡、诱导增殖/毁灭和突变。本综述分为两部分:在第一部分中,综述了过去十年文献中的恒温动力学理论数学框架,并提出了一种统一的方法;综述的第二部分专门讨论了过去十年中针对复杂生物系统提出的恒温动力学理论衍生出的具体数学模型,如伤口愈合疾病、人类免疫系统的识别过程和学习动力学、癌症-免疫系统竞争过程中发生的隐藏-学习动力学和免疫编辑过程。从理论和应用的角度讨论了未来的研究前景,这表明应用科学领域不同学者之间的重要相互作用,以及对多学科方法的渴望,或者说对每种活性物质系统建模理论的渴望。
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A decade of thermostatted kinetic theory models for complex active matter living systems

In the last decade, the thermostatted kinetic theory has been proposed as a general paradigm for the modeling of complex systems of the active matter and, in particular, in biology. Homogeneous and inhomogeneous frameworks of the thermostatted kinetic theory have been employed for modeling phenomena that are the result of interactions among the elements, called active particles, composing the system. Functional subsystems contain heterogeneous active particles that are able to perform the same task, called activity. Active matter living systems usually operate out-of-equilibrium; accordingly, a mathematical thermostat is introduced in order to regulate the fluctuations of the activity of particles. The time evolution of the functional subsystems is obtained by introducing the conservative and the nonconservative interactions which represent activity-transition, natural birth/death, induced proliferation/destruction, and mutation of the active particles. This review paper is divided in two parts: In the first part the review deals with the mathematical frameworks of the thermostatted kinetic theory that can be found in the literature of the last decade and a unified approach is proposed; the second part of the review is devoted to the specific mathematical models derived within the thermostatted kinetic theory presented in the last decade for complex biological systems, such as wound healing diseases, the recognition process and the learning dynamics of the human immune system, the hiding-learning dynamics and the immunoediting process occurring during the cancer-immune system competition. Future research perspectives are discussed from the theoretical and application viewpoints, which suggest the important interplay among the different scholars of the applied sciences and the desire of a multidisciplinary approach or rather a theory for the modeling of every active matter system.

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来源期刊
Physics of Life Reviews
Physics of Life Reviews 生物-生物物理
CiteScore
20.30
自引率
14.50%
发文量
52
审稿时长
8 days
期刊介绍: Physics of Life Reviews, published quarterly, is an international journal dedicated to review articles on the physics of living systems, complex phenomena in biological systems, and related fields including artificial life, robotics, mathematical bio-semiotics, and artificial intelligent systems. Serving as a unifying force across disciplines, the journal explores living systems comprehensively—from molecules to populations, genetics to mind, and artificial systems modeling these phenomena. Inviting reviews from actively engaged researchers, the journal seeks broad, critical, and accessible contributions that address recent progress and sometimes controversial accounts in the field.
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