无标签、基于机器学习的阿尔茨海默病血浆元素生物标志物

IF 3.1 2区 化学 Q2 CHEMISTRY, ANALYTICAL Journal of Analytical Atomic Spectrometry Pub Date : 2024-07-12 DOI:10.1039/D4JA00090K
Ali Safi, Noureddine Melikechi, Kemal Efe Eseller, Richard M. Gaschnig and Weiming Xia
{"title":"无标签、基于机器学习的阿尔茨海默病血浆元素生物标志物","authors":"Ali Safi, Noureddine Melikechi, Kemal Efe Eseller, Richard M. Gaschnig and Weiming Xia","doi":"10.1039/D4JA00090K","DOIUrl":null,"url":null,"abstract":"<p >Using inductively coupled plasma mass spectrometry (ICP-MS), we have measured the elemental concentrations of Na, Fe, Cu, P, Mg, Zn, K in plasma samples of 25 Alzheimer's disease (AD) patients and 34 healthy individuals. Given the multidimensional nature of the ICP-MS data, we used support vector machines and logistic regression to illustrate the elemental distribution of each donor and seek key features that may differentiate plasma samples of AD patients from those of healthy individuals. We found that ratios of the elemental concentrations of Na over K, Fe over Na, and P over Zn yield specificity, sensitivity, and accuracy of 79%, 84% and 81% respectively. This information was then used to seek from the mass spectrometric data a differentiation of the plasma samples from AD and healthy donors. Plotted as a function of the Na/K, Fe/Na, and P/Zn, the ICP-MS data reveals a linear delineation between the two groups of samples yielding to the correct classification 21 of 25 AD and 28 of 34 HC plasma samples. These findings highlight the importance of elemental ratios present in plasma and suggest that the ratios of the elemental concentrations of blood metals may be considered as biomarkers that can distinguish plasma samples of AD patients from healthy subjects.</p>","PeriodicalId":81,"journal":{"name":"Journal of Analytical Atomic Spectrometry","volume":" 8","pages":" 1961-1970"},"PeriodicalIF":3.1000,"publicationDate":"2024-07-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/ja/d4ja00090k?page=search","citationCount":"0","resultStr":"{\"title\":\"Label free, machine learning informed plasma-based elemental biomarkers of Alzheimer's disease†\",\"authors\":\"Ali Safi, Noureddine Melikechi, Kemal Efe Eseller, Richard M. Gaschnig and Weiming Xia\",\"doi\":\"10.1039/D4JA00090K\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >Using inductively coupled plasma mass spectrometry (ICP-MS), we have measured the elemental concentrations of Na, Fe, Cu, P, Mg, Zn, K in plasma samples of 25 Alzheimer's disease (AD) patients and 34 healthy individuals. Given the multidimensional nature of the ICP-MS data, we used support vector machines and logistic regression to illustrate the elemental distribution of each donor and seek key features that may differentiate plasma samples of AD patients from those of healthy individuals. We found that ratios of the elemental concentrations of Na over K, Fe over Na, and P over Zn yield specificity, sensitivity, and accuracy of 79%, 84% and 81% respectively. This information was then used to seek from the mass spectrometric data a differentiation of the plasma samples from AD and healthy donors. Plotted as a function of the Na/K, Fe/Na, and P/Zn, the ICP-MS data reveals a linear delineation between the two groups of samples yielding to the correct classification 21 of 25 AD and 28 of 34 HC plasma samples. These findings highlight the importance of elemental ratios present in plasma and suggest that the ratios of the elemental concentrations of blood metals may be considered as biomarkers that can distinguish plasma samples of AD patients from healthy subjects.</p>\",\"PeriodicalId\":81,\"journal\":{\"name\":\"Journal of Analytical Atomic Spectrometry\",\"volume\":\" 8\",\"pages\":\" 1961-1970\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2024-07-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://pubs.rsc.org/en/content/articlepdf/2024/ja/d4ja00090k?page=search\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Analytical Atomic Spectrometry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://pubs.rsc.org/en/content/articlelanding/2024/ja/d4ja00090k\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, ANALYTICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Analytical Atomic Spectrometry","FirstCategoryId":"92","ListUrlMain":"https://pubs.rsc.org/en/content/articlelanding/2024/ja/d4ja00090k","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, ANALYTICAL","Score":null,"Total":0}
引用次数: 0

摘要

我们使用电感耦合等离子体质谱法(ICP-MS)测量了 25 名阿尔茨海默病(AD)患者和 34 名健康人血浆样本中的钠、铁、铜、磷、镁、锌、钾元素浓度。鉴于 ICP-MS 数据的多维性,我们使用支持向量机和逻辑回归来说明每个供体的元素分布情况,并寻找可能区分 AD 患者和健康人血浆样本的关键特征。我们发现,Na 相对于 K、Fe 相对于 Na 和 P 相对于 Zn 的元素浓度比值的特异性、灵敏度和准确度分别为 79%、84% 和 81%。然后,我们利用这些信息从质谱数据中寻求区分注意力缺失症和健康捐献者血浆样本的方法。通过绘制 Na/K、Fe/Na 和 P/Zn 的函数图,ICP-MS 数据揭示了两组样本之间的线性界限,在 25 个 AD 和 34 个 HC 血浆样本中,分别有 21 个和 28 个样本被正确分类。这些发现凸显了血浆中元素比率的重要性,并表明血液中金属元素浓度的比率可被视为生物标志物,可将注意力缺失症患者的血浆样本与健康人的血浆样本区分开来。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Label free, machine learning informed plasma-based elemental biomarkers of Alzheimer's disease†

Using inductively coupled plasma mass spectrometry (ICP-MS), we have measured the elemental concentrations of Na, Fe, Cu, P, Mg, Zn, K in plasma samples of 25 Alzheimer's disease (AD) patients and 34 healthy individuals. Given the multidimensional nature of the ICP-MS data, we used support vector machines and logistic regression to illustrate the elemental distribution of each donor and seek key features that may differentiate plasma samples of AD patients from those of healthy individuals. We found that ratios of the elemental concentrations of Na over K, Fe over Na, and P over Zn yield specificity, sensitivity, and accuracy of 79%, 84% and 81% respectively. This information was then used to seek from the mass spectrometric data a differentiation of the plasma samples from AD and healthy donors. Plotted as a function of the Na/K, Fe/Na, and P/Zn, the ICP-MS data reveals a linear delineation between the two groups of samples yielding to the correct classification 21 of 25 AD and 28 of 34 HC plasma samples. These findings highlight the importance of elemental ratios present in plasma and suggest that the ratios of the elemental concentrations of blood metals may be considered as biomarkers that can distinguish plasma samples of AD patients from healthy subjects.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
6.20
自引率
26.50%
发文量
228
审稿时长
1.7 months
期刊介绍: Innovative research on the fundamental theory and application of spectrometric techniques.
期刊最新文献
Back cover Evaluation of miniaturized ultrasonic nebulization for high-efficiency sampling in characterization of silver nanoparticles by single particle inductively coupled plasma mass spectrometry† Atomic spectrometry update: review of advances in the analysis of metals, chemicals and materials Assessing the performance of handheld LIBS for predicting soil organic carbon and texture in European soils† Research on a bimodal fusion detection method for surface defects of metal AM components based on LIBS
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1