重氮化合物与缺电子烯烃的对映体选择性 [2 + 1] 环丙烷化反应的理论见解。

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-07-18 DOI:10.1007/s00894-024-06079-9
Xudong Liu, Ruyu Zhu, Yongsheng Yang, Ying Xue, Dingguo Xu
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引用次数: 0

摘要

背景:环丙烷骨架因其独特的结构特性而在生物活性分子中发挥着重要作用。这引发了人们对环丙烷衍生物立体选择性合成领域的浓厚兴趣和深入探索。本研究采用 DFT 计算方法,研究了 3-偶氮-N-甲基吲哚(R1)与两种缺电子烯烃(R2 和 R3)在水介质和甲苯介质中通过无催化剂 [2 + 1]- 环丙烷化反应非对映异构合成环丙烷衍生物的机理和立体选择性的来源。研究结果表明,这些[2 + 1]环化反应分两个阶段进行,其中第一步不仅是决定反应速率的步骤,而且在很大程度上决定了产物的立体选择性。计算得出的非对映比率与实验结果一致。此外,通过利用非共价相互作用(NCI)分析和基于分子力场的能量分解分析(EDA-FF),我们阐明了第一步过渡态 TS1s 中反应物片段之间的静电相互作用是决定立体选择性的主要因素,而不是实验假设的立体阻碍和 π-π 堆积相互作用:方法:在 M06-2X(D3)/SMD/6-31+G(d,p)理论水平上,使用 DFT 方法全面优化了水和甲苯溶剂中势能面 (PES) 上所有最小值和过渡态的几何结构。在 M06-2X(D3)/6-311 + G(d,p) 水平上,根据溶液中的优化几何形状进行了单点能量计算。所有 DFT 计算均使用高斯 09 软件进行。优化后的分子结构使用 CYLview 软件进行可视化。使用 Multiwfn 和 VMD 软件进行了 NCI 分析。Multiwfn 程序还用于 CDFT 和 EDA-FF 分析。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Theoretical insights into enantioselective [2 + 1] cyclopropanation reactions of diazo compounds with electron-deficient olefins

Context

The cyclopropane skeleton plays a significant role in bioactive  molecules due to its distinctive structural properties. This has sparked keen interest and in-depth exploration in the field of stereoselective synthesis of cyclopropane derivatives. In the present study, the mechanism and the origin of stereoselectivity of diastereodivergent synthesis of cyclopropane derivatives via the catalyst-free [2 + 1]-cyclopropanation reactions of 3-diazo-N-methylindole (R1) with two types of electron-deficient olefins (R2 and R3) in both aqueous and toluene media have been studied using the DFT calculations. The findings indicate that these [2 + 1] cycloaddition reactions proceed in two stages, where the first step is not only the rate-determining step but also critically dictates the stereoselectivity of the product. The calculated diastereomeric ratios are in agreement with the experimental results. Furthermore, by utilizing non-covalent interaction (NCI) analysis and energy decomposition analysis based on molecular force fields (EDA-FF), we elucidated that the electrostatic interactions between reactant fragments in the transition state TS1s for the first step are the predominant factors determining the stereoselectivity, as opposed to the experimentally hypothesized steric hindrance and π-π stacking interactions.

Methods

The geometrical structures of all minima and transition states on the potential energy surface (PES) in solvents water and toluene were fully optimized using the DFT method at the M06-2X(D3)/SMD/6–31 + G(d,p) level of theory. Single-point energy calculations were carried out based on the optimized geometries in the solution at the M06-2X(D3)/6–311 + G(d,p) level. All the DFT calculations were performed using the Gaussian 09 software. The optimized molecular structures were visualized using CYLview software. NCI analysis was performed using the Multiwfn and VMD softwares. The Multiwfn program was also used for CDFT and EDA-FF analyses.

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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