Congregibacter variabilis sp.和 Congregibacter brevis sp.

IF 4.3 3区 材料科学 Q1 ENGINEERING, ELECTRICAL & ELECTRONIC ACS Applied Electronic Materials Pub Date : 2024-09-01 Epub Date: 2024-07-18 DOI:10.1007/s12275-024-00158-5
Hyeonsu Tak, Miri S Park, Hyerim Cho, Yeonjung Lim, Jang-Cheon Cho
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引用次数: 0

摘要

从韩国南海沿岸海水样本中分离出两株革兰氏染色阴性、需氧、通过鞭毛运动的短杆状细菌,命名为 IMCC43200T 和 IMCC45268T。菌株 IMCC43200T 和 IMCC45268T 的 16S rRNA 基因序列相似度为 98.6%,与 litoralis Congregibacter KT71T 关系密切(分别为 98.8% 和 98.7%)。IMCC43200T 和 IMCC45268T 的完整全基因组序列大小分别为 3.93 和 3.86 Mb,DNA G + C 含量分别为 54.8% 和 54.2%。两株菌株之间的平均核苷酸同一性(ANI)和数字DNA-DNA杂交(dDDH)值分别为74.5%和23.4%,表明它们是独立的物种。两株菌株的 ANI 值≤ 75.8%,dDDH 值≤ 23.0%,与同源菌属的模式种和唯一种(C. litoralis)相似,表明每株菌株都代表一个新物种。两株菌株都含有总特征 3(包括 C16:1 ω6c 和/或 C16:1 ω7c)和总特征 8(包括 C18:1 ω6c 和/或 C18:1 ω7c)作为主要脂肪酸成分。在这两种菌株中检测到的最主要的异戊二烯醌是泛醌-8(Q-8)。两株菌株的主要极性脂质为磷脂酰乙醇胺、磷脂酰甘油、磷脂和氨基脂质。根据系统发育、基因组和表型特征,IMCC43200T 和 IMCC45268T 菌株被认为是 Congregibacter 属中的两个新种,分别命名为 Congregibacter variabilis sp.nov.和 Congregibacter brevis sp.nov.,分别以 IMCC43200T(= KCTC 8133T = NBRC 116295T = CCTCC AB 2023139T)和 IMCC45268T(= KCTC 92921T = NBRC 116135T)为模式菌株。
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Congregibacter variabilis sp. nov. and Congregibacter brevis sp. nov. Within the OM60/NOR5 Clade, Isolated from Seawater, and Emended Description of the Genus Congregibacter.

Two Gram-stain-negative, aerobic, motile by means of flagella, short rod-shaped bacterial strains, designated IMCC43200T and IMCC45268T, were isolated from coastal seawater samples collected from the South Sea of Korea. Strains IMCC43200T and IMCC45268T shared 98.6% 16S rRNA gene sequence similarity and were closely related to Congregibacter litoralis KT71T (98.8% and 98.7%, respectively). Complete whole-genome sequences of IMCC43200T and IMCC45268T were 3.93 and 3.86 Mb in size with DNA G + C contents of 54.8% and 54.2%, respectively. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between the two strains were 74.5% and 23.4%, respectively, revealing that they are independent species. The two strains showed ANI values of ≤ 75.8% and dDDH values of ≤ 23.0% to the type and only species of the genus Congregibacter (C. litoralis), indicating that each strain represents a novel species. Both strains contained summed feature 3 (comprising C16:1 ω6c and/or C16:1 ω7c) and summed feature 8 (comprising C18:1 ω6c and/or C18:1 ω7c) as major fatty acid constituents. The predominant isoprenoid quinone detected in both strains was ubiquinone-8 (Q-8). The major polar lipids of the two strains were phosphatidylethanolamine, phosphatidylglycerol, phospholipids, and aminolipids. Based on the phylogenetic, genomic, and phenotypic characterization, strains IMCC43200T and IMCC45268T were considered to represent two novel species within the genus Congregibacter, for which the names Congregibacter variabilis sp. nov. and Congregibacter brevis sp. nov. are proposed with IMCC43200T (= KCTC 8133T = NBRC 116295T = CCTCC AB 2023139T) and IMCC45268T (= KCTC 92921T = NBRC 116135T) as the type strains, respectively.

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