对马铃薯(Solanum tuberosum)PYL基因的全面分析凸显了它们在应激反应中的作用。

IF 2.6 4区 生物学 Q2 PLANT SCIENCES Functional Plant Biology Pub Date : 2024-07-01 DOI:10.1071/FP24094
Shareef Gul, Hameed Gul, Muhammad Shahzad, Ikram Ullah, Ali Shahzad, Shahid Ullah Khan
{"title":"对马铃薯(Solanum tuberosum)PYL基因的全面分析凸显了它们在应激反应中的作用。","authors":"Shareef Gul, Hameed Gul, Muhammad Shahzad, Ikram Ullah, Ali Shahzad, Shahid Ullah Khan","doi":"10.1071/FP24094","DOIUrl":null,"url":null,"abstract":"<p><p>Abscisic acid (ABA) regulates plant development, seed germination, and stress responses. The PYR1-like (PYL) proteins are essential for ABA signalling. However, the evolution and expression of PYL genes in potato (Solanum tuberosum ) remain poorly understood. Here, we analysed and identified 17 PYL genes in the potato genome, which were categorised into three groups based on phylogenetic analysis. These genes are distributed across nine chromosomes with predicted proteins subcellar localisation primarily in the cytoplasm. These StPYLs revealed conserved exon structures and domains among the groups. Promoter region analysis indicated hormone and stress-related elements in all StPYL s. Protein-protein interactions and microRNA networks predicted that the interactions of StPYLs are crucial components of ABA signalling, underlining their pivotal role in stress management and growth regulation in potato. Expression profiling across different tissues and under various stresses revealed their varied expression pattern. Further, we validated the expression pattern of selected StPYLs through reverse transcription quantitative PCR under drought, salt, and Phytophthora infestans stresses. This revealed consistent upregulation of StPYL6 in these stresses, while StPYL11 exhibited significant downregulation over time. Other genes showed downregulation under drought and salt stresses while upregulation under P. infestans . Overall, our results suggested the potential role of PYL genes in abiotic and biotic stresses.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.6000,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Comprehensive analysis of potato (<i>Solanum tuberosum</i>) <i>PYL</i> genes highlights their role in stress responses.\",\"authors\":\"Shareef Gul, Hameed Gul, Muhammad Shahzad, Ikram Ullah, Ali Shahzad, Shahid Ullah Khan\",\"doi\":\"10.1071/FP24094\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Abscisic acid (ABA) regulates plant development, seed germination, and stress responses. The PYR1-like (PYL) proteins are essential for ABA signalling. However, the evolution and expression of PYL genes in potato (Solanum tuberosum ) remain poorly understood. Here, we analysed and identified 17 PYL genes in the potato genome, which were categorised into three groups based on phylogenetic analysis. These genes are distributed across nine chromosomes with predicted proteins subcellar localisation primarily in the cytoplasm. These StPYLs revealed conserved exon structures and domains among the groups. Promoter region analysis indicated hormone and stress-related elements in all StPYL s. Protein-protein interactions and microRNA networks predicted that the interactions of StPYLs are crucial components of ABA signalling, underlining their pivotal role in stress management and growth regulation in potato. Expression profiling across different tissues and under various stresses revealed their varied expression pattern. Further, we validated the expression pattern of selected StPYLs through reverse transcription quantitative PCR under drought, salt, and Phytophthora infestans stresses. This revealed consistent upregulation of StPYL6 in these stresses, while StPYL11 exhibited significant downregulation over time. Other genes showed downregulation under drought and salt stresses while upregulation under P. infestans . Overall, our results suggested the potential role of PYL genes in abiotic and biotic stresses.</p>\",\"PeriodicalId\":12483,\"journal\":{\"name\":\"Functional Plant Biology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2024-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Functional Plant Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1071/FP24094\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Functional Plant Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1071/FP24094","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0

摘要

脱落酸(ABA)调节植物的发育、种子萌发和胁迫反应。PYR1-like(PYL)蛋白是 ABA 信号传导的关键。然而,人们对马铃薯(Solanum tuberosum)中PYL基因的进化和表达仍然知之甚少。在此,我们分析并鉴定了马铃薯基因组中的 17 个PYL 基因,并根据系统发育分析将其分为三组。这些基因分布在九条染色体上,预测蛋白亚细胞定位主要在细胞质中。这些 StPYLs 揭示了各组之间保守的外显子结构和结构域。蛋白-蛋白相互作用和 microRNA 网络预测 StPYLs 的相互作用是 ABA 信号的关键组成部分,强调了它们在马铃薯胁迫管理和生长调节中的关键作用。不同组织和不同胁迫下的表达谱分析揭示了它们不同的表达模式。此外,我们还通过反转录定量 PCR 验证了所选 StPYLs 在干旱、盐分和根腐病胁迫下的表达模式。结果表明,StPYL6 在这些胁迫下持续上调,而 StPYL11 则随着时间的推移明显下调。其他基因在干旱和盐胁迫下表现出下调,而在疫霉菌胁迫下则表现出上调。总之,我们的研究结果表明了PYL基因在非生物和生物胁迫中的潜在作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Comprehensive analysis of potato (Solanum tuberosum) PYL genes highlights their role in stress responses.

Abscisic acid (ABA) regulates plant development, seed germination, and stress responses. The PYR1-like (PYL) proteins are essential for ABA signalling. However, the evolution and expression of PYL genes in potato (Solanum tuberosum ) remain poorly understood. Here, we analysed and identified 17 PYL genes in the potato genome, which were categorised into three groups based on phylogenetic analysis. These genes are distributed across nine chromosomes with predicted proteins subcellar localisation primarily in the cytoplasm. These StPYLs revealed conserved exon structures and domains among the groups. Promoter region analysis indicated hormone and stress-related elements in all StPYL s. Protein-protein interactions and microRNA networks predicted that the interactions of StPYLs are crucial components of ABA signalling, underlining their pivotal role in stress management and growth regulation in potato. Expression profiling across different tissues and under various stresses revealed their varied expression pattern. Further, we validated the expression pattern of selected StPYLs through reverse transcription quantitative PCR under drought, salt, and Phytophthora infestans stresses. This revealed consistent upregulation of StPYL6 in these stresses, while StPYL11 exhibited significant downregulation over time. Other genes showed downregulation under drought and salt stresses while upregulation under P. infestans . Overall, our results suggested the potential role of PYL genes in abiotic and biotic stresses.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Functional Plant Biology
Functional Plant Biology 生物-植物科学
CiteScore
5.50
自引率
3.30%
发文量
156
审稿时长
1 months
期刊介绍: Functional Plant Biology (formerly known as Australian Journal of Plant Physiology) publishes papers of a broad interest that advance our knowledge on mechanisms by which plants operate and interact with environment. Of specific interest are mechanisms and signal transduction pathways by which plants adapt to extreme environmental conditions such as high and low temperatures, drought, flooding, salinity, pathogens, and other major abiotic and biotic stress factors. FPB also encourages papers on emerging concepts and new tools in plant biology, and studies on the following functional areas encompassing work from the molecular through whole plant to community scale. FPB does not publish merely phenomenological observations or findings of merely applied significance. Functional Plant Biology is published with the endorsement of the Commonwealth Scientific and Industrial Research Organisation (CSIRO) and the Australian Academy of Science. Functional Plant Biology is published in affiliation with the Federation of European Societies of Plant Biology and in Australia, is associated with the Australian Society of Plant Scientists and the New Zealand Society of Plant Biologists.
期刊最新文献
Glycoside hydrolases reveals their differential role in response to drought and salt stress in potato (Solanum tuberosum) Coordination between water relations strategy and carbon investment in leaf and stem in six fruit tree species. Genome editing for improvement of biotic and abiotic stress tolerance in cereals. Investigating the combined effects of β-sitosterol and biochar on nutritional value and drought tolerance in Phaseolus vulgaris under drought stress. Augmenting the basis of lodging tolerance in wheat (Triticum aestivum) under natural and simulated conditions.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1