通过 GC-MS 和分子对接分析探索迷迭香化合物对阿尔茨海默病的治疗潜力。

In silico pharmacology Pub Date : 2024-07-17 eCollection Date: 2024-01-01 DOI:10.1007/s40203-024-00238-9
Anjali Singh, Dhananjay Singh, Neeraj Tiwari, Pooja Mittal, Mohammed Haris Siddiqui, Nishu Mittal
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引用次数: 0

摘要

阿尔茨海默病(AD)是一种与年龄相关的神经退行性疾病,是导致老年人痴呆的主要原因。目前,这种疾病还没有永久性的治疗方案,现有的药物治疗方案效果有限,且副作用大。为了评估迷迭香化合物对神经的保护作用,我们利用气相色谱-质谱(GC-MS)分析技术开始了一项广泛的研究。气相色谱-质谱法研究了迷迭香精油的成分,共鉴定出 120 种挥发性化合物。从迷迭香精油的 GC-MS 数据中选出了 36 种浓度大于 1%的化合物,以及 3 种已报道的知名迷迭香非挥发性化合物。根据与每个靶蛋白的结合能,选出了前 3 个化合物,共发现了 6 个最佳候选靶蛋白:α Amyrin、Rosmanol、Androsta-1,4-dien-3-one,16,17-dihydroxy-(16.beta.,17.beta)、4-甲基-N-(5-硝基-2-吡啶基)苯磺酰胺、Methyl abietate 和迷迭香酸。α-芳樟醇、玫瑰酚和雄甾-1,4-二烯-3-酮,16,17-二羟基-(16.beta.,17.beta)与 ACE 靶点的结合能分别为-10 kcal/mol、-9.3 kcal/mol 和-9.3 kcal/mol。GSK3-α-Amyrin (-9.1 kcal/mol)、BACE1- α-Amyrin (-9.9 kcal/mol)和 TACE- Benzenesulfonamide,4-methyl-N-(5-nitro-2-pyridinyl) (-9.1 kcal/mol)之间形成的复合物显示出最佳的结合亲和力。通过对目标蛋白质的已知抑制剂/药物与对每种蛋白质具有最高结合亲和力的迷迭香化合物进行比较分析,还发现迷迭香天然化合物在结合能方面具有更高的潜力。通过 PkCSM 和 Deep-PK 工具,筛选出了 Lipinski's rule of five 和 ADME/T 分析等可药性。这项研究的结果表明,迷迭香化合物具有治疗注意力缺失症的潜力。这种实验证实可以开发出针对AD药理靶点的新型候选药物:在线版本包含补充材料,可查阅 10.1007/s40203-024-00238-9。
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Exploring the therapeutic potential of rosemary compounds against Alzheimer's disease through GC-MS and molecular docking analysis.

Alzheimer's disease (AD) is an age-related neurodegenerative disorder that is the leading cause of dementia in elderly individuals. Currently, there is no permanent treatment option available for this disorder, and the existing drug regimens are associated with limited effectiveness and side effects. To evaluate the neuroprotective effect of rosemary compounds, an extensive study was started with gas chromatography-mass spectrometry (GC-MS) analysis. GC-MS was performed to study the composition of rosemary essential oil and a total of 120 volatile compounds were identified. The 36 compounds from GC-MS data of rosemary essential oil having > 1% concentration in the oil were selected along with 3 already reported well-known non-volatile compounds of rosemary. se39 bioactive natural compounds of rosemary were docked against ACE, BACE1, GSK3, and TACE proteins, which are involved in AD progression. The top 3 compounds against each target protein were selected based on their binding energies and a total of 6 compounds were found as best candidates to target the AD; α Amyrin, Rosmanol, Androsta-1,4-dien-3-one,16,17-dihydroxy-(16.beta.,17.beta), Benzenesulfonamide,4-methyl-N-(5-nitro-2-pyridinyl), Methyl abietate, and Rosmarinic acid were the best compounds. The binding energy of α-Amyrin, Rosmanol, and Androsta-1,4-dien-3-one,16,17-dihydroxy-(16.beta.,17.beta) to ACE target is -10 kcal/mol, -9.3 kcal/mol, and - 9.3 kcal/mol, respectively. The best binding affinity was shown by complexes formed between GSK3-α-Amyrin (-9.1 kcal/mol), BACE1- α-Amyrin (-9.9 kcal/mol), and TACE- Benzenesulfonamide,4-methyl-N-(5-nitro-2-pyridinyl) (-9.1 kcal/mol). The comparative analysis between known inhibitors/ drugs of target proteins and the rosemary compound that shows the highest binding affinity against each protein also revealed the higher potential of rosemary natural compounds in terms of binding energy. The drug-likeliness properties like Lipinski's rule of five and the ADME/T analysis of top-selected compounds were screened through PkCSM and Deep-PK tools. The findings from this study suggested that rosemary compounds have the potential as a therapeutic lead for treating AD. This kind of experimental confirmation can lead to novel drug candidates against the pharmacological targets of AD.

Supplementary information: The online version contains supplementary material available at 10.1007/s40203-024-00238-9.

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