Wenshuai Chen, Guanfei Zhao, Ming Lei, Rongjie Zhu
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引用次数: 0
摘要
茜草科植物 Nostolachma jenkinsii (Hook.f.) Deb & J.Lahiri 是一种濒危野生植物,具有潜在的经济价值。本研究对 N. jenkinsii 的完整叶绿体基因组进行了测序,以深入了解其基因组特征,并更好地理解茜草科植物之间的系统发育关系。叶绿体基因组总长度为 155,036 bp,包括两个反向重复区(IR),每个区跨度为 25,692 bp;一个大单拷贝区(LSC),长度为 85,437 bp;一个短单拷贝区(SSC),长度为 18,215 bp。叶绿体基因组的总 GC 含量为 37%。通过注释分析,叶绿体基因组中有N. jenkinsii 的 54 个 tRNA 基因、10 个 rRNA 基因和 107 个蛋白质编码基因均已注释。此外,我们还进行了系统发生分析,发现 N. jenkinsii、D. fruticosa 和 D. dubia 之间的关系密切,并将它们归入茜草科。
The complete chloroplast genome sequence of Nostolachma jenkinsii (Hook.f.) Deb & J.Lahiri, an endangered coffeeae plant.
Nostolachma jenkinsii (Hook.f.) Deb & J.Lahiri, a member of the Rubiaceae family, is an endangered wild plant species with potential economic value. In this research, the complete chloroplast genome of N. jenkinsii was sequenced to gain insight into its genome feature and better understand the phylogenetic relationships among the Rubiaceae species. The chloroplast genome, with a total length of 155,036 bp, comprises two inverted repeats (IR) regions spanning 25,692 bp each, a large single-copy (LSC) region measuring 85,437 bp, and a short single-copy (SSC) region measuring 18,215 bp. There is an overall 37% GC content in the chloroplast genome. By annotation analysis,. 54 tRNA genes, 10 rRNA genes, and 107 protein-coding genes were all annotated in N. jenkinsii. Furthermore, we applied phylogenetic analysis that revealed a close relationship between N. jenkinsii, D. fruticosa and D. dubia, placing them together within the Rubiaceae family.