濒危咖啡科植物 Nostolachma jenkinsii (Hook.f.) Deb & J.Lahiri 的完整叶绿体基因组序列。

Pub Date : 2024-07-23 eCollection Date: 2024-01-01 DOI:10.1080/23802359.2024.2342936
Wenshuai Chen, Guanfei Zhao, Ming Lei, Rongjie Zhu
{"title":"濒危咖啡科植物 Nostolachma jenkinsii (Hook.f.) Deb & J.Lahiri 的完整叶绿体基因组序列。","authors":"Wenshuai Chen, Guanfei Zhao, Ming Lei, Rongjie Zhu","doi":"10.1080/23802359.2024.2342936","DOIUrl":null,"url":null,"abstract":"<p><p><i>Nostolachma jenkinsii</i> (Hook.f.) Deb & J.Lahiri, a member of the <i>Rubiaceae</i> family, is an endangered wild plant species with potential economic value. In this research, the complete chloroplast genome of <i>N. jenkinsii</i> was sequenced to gain insight into its genome feature and better understand the phylogenetic relationships among the <i>Rubiaceae</i> species. The chloroplast genome, with a total length of 155,036 bp, comprises two inverted repeats (IR) regions spanning 25,692 bp each, a large single-copy (LSC) region measuring 85,437 bp, and a short single-copy (SSC) region measuring 18,215 bp. There is an overall 37% GC content in the chloroplast genome. By annotation analysis,. 54 tRNA genes, 10 rRNA genes, and 107 protein-coding genes were all annotated in <i>N. jenkinsii.</i> Furthermore, we applied phylogenetic analysis that revealed a close relationship between <i>N. jenkinsii</i>, <i>D. fruticosa</i> and <i>D. dubia</i>, placing them together within the <i>Rubiaceae</i> family.</p>","PeriodicalId":0,"journal":{"name":"","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11271133/pdf/","citationCount":"0","resultStr":"{\"title\":\"The complete chloroplast genome sequence of <i>Nostolachma jenkinsii</i> (Hook.f.) Deb & J.Lahiri, an endangered coffeeae plant.\",\"authors\":\"Wenshuai Chen, Guanfei Zhao, Ming Lei, Rongjie Zhu\",\"doi\":\"10.1080/23802359.2024.2342936\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Nostolachma jenkinsii</i> (Hook.f.) Deb & J.Lahiri, a member of the <i>Rubiaceae</i> family, is an endangered wild plant species with potential economic value. In this research, the complete chloroplast genome of <i>N. jenkinsii</i> was sequenced to gain insight into its genome feature and better understand the phylogenetic relationships among the <i>Rubiaceae</i> species. The chloroplast genome, with a total length of 155,036 bp, comprises two inverted repeats (IR) regions spanning 25,692 bp each, a large single-copy (LSC) region measuring 85,437 bp, and a short single-copy (SSC) region measuring 18,215 bp. There is an overall 37% GC content in the chloroplast genome. By annotation analysis,. 54 tRNA genes, 10 rRNA genes, and 107 protein-coding genes were all annotated in <i>N. jenkinsii.</i> Furthermore, we applied phylogenetic analysis that revealed a close relationship between <i>N. jenkinsii</i>, <i>D. fruticosa</i> and <i>D. dubia</i>, placing them together within the <i>Rubiaceae</i> family.</p>\",\"PeriodicalId\":0,\"journal\":{\"name\":\"\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0,\"publicationDate\":\"2024-07-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11271133/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1080/23802359.2024.2342936\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/23802359.2024.2342936","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

茜草科植物 Nostolachma jenkinsii (Hook.f.) Deb & J.Lahiri 是一种濒危野生植物,具有潜在的经济价值。本研究对 N. jenkinsii 的完整叶绿体基因组进行了测序,以深入了解其基因组特征,并更好地理解茜草科植物之间的系统发育关系。叶绿体基因组总长度为 155,036 bp,包括两个反向重复区(IR),每个区跨度为 25,692 bp;一个大单拷贝区(LSC),长度为 85,437 bp;一个短单拷贝区(SSC),长度为 18,215 bp。叶绿体基因组的总 GC 含量为 37%。通过注释分析,叶绿体基因组中有N. jenkinsii 的 54 个 tRNA 基因、10 个 rRNA 基因和 107 个蛋白质编码基因均已注释。此外,我们还进行了系统发生分析,发现 N. jenkinsii、D. fruticosa 和 D. dubia 之间的关系密切,并将它们归入茜草科。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
The complete chloroplast genome sequence of Nostolachma jenkinsii (Hook.f.) Deb & J.Lahiri, an endangered coffeeae plant.

Nostolachma jenkinsii (Hook.f.) Deb & J.Lahiri, a member of the Rubiaceae family, is an endangered wild plant species with potential economic value. In this research, the complete chloroplast genome of N. jenkinsii was sequenced to gain insight into its genome feature and better understand the phylogenetic relationships among the Rubiaceae species. The chloroplast genome, with a total length of 155,036 bp, comprises two inverted repeats (IR) regions spanning 25,692 bp each, a large single-copy (LSC) region measuring 85,437 bp, and a short single-copy (SSC) region measuring 18,215 bp. There is an overall 37% GC content in the chloroplast genome. By annotation analysis,. 54 tRNA genes, 10 rRNA genes, and 107 protein-coding genes were all annotated in N. jenkinsii. Furthermore, we applied phylogenetic analysis that revealed a close relationship between N. jenkinsii, D. fruticosa and D. dubia, placing them together within the Rubiaceae family.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1