Piper longum L.的基因组草案。

IF 2 3区 农林科学 Q2 AGRONOMY Crop Science Pub Date : 2024-07-28 DOI:10.1002/csc2.21313
Deepu Mathew, Ravisankar Valsalan
{"title":"Piper longum L.的基因组草案。","authors":"Deepu Mathew,&nbsp;Ravisankar Valsalan","doi":"10.1002/csc2.21313","DOIUrl":null,"url":null,"abstract":"<p>Genome of <i>Piper longum</i> (long pepper, Piperaceae), an important medicinal plant, is being reported. The sequencing was carried out on Illumina Novaseq-6000 platform at 150x coverage, and de novo scaffold-level assembly has resulted in a 447.7 Mb genome (89,204 scaffolds with an N50 value of 10.7 kb). Even though long pepper is valued for its pungent alkaloids, especially piperine, mechanism of piperine biosynthesis is yet to be revealed. Functional annotation of the genes has given a better understanding of the genomic features and genes involved in piperine biosynthesis. Phylogenetic relationship of long pepper with other members of Piperaceae family and the expression of <i>Piperine synthase</i> and <i>Piperamide synthase</i> genes in the developing leaves and spikes were also analyzed. The results indicated that this medicinal plant may have genes similar to black pepper involved in the biosynthesis of piperine. Raw reads and the assembly are made publicly available.</p>","PeriodicalId":10849,"journal":{"name":"Crop Science","volume":null,"pages":null},"PeriodicalIF":2.0000,"publicationDate":"2024-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The draft genome of Piper longum L.\",\"authors\":\"Deepu Mathew,&nbsp;Ravisankar Valsalan\",\"doi\":\"10.1002/csc2.21313\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Genome of <i>Piper longum</i> (long pepper, Piperaceae), an important medicinal plant, is being reported. The sequencing was carried out on Illumina Novaseq-6000 platform at 150x coverage, and de novo scaffold-level assembly has resulted in a 447.7 Mb genome (89,204 scaffolds with an N50 value of 10.7 kb). Even though long pepper is valued for its pungent alkaloids, especially piperine, mechanism of piperine biosynthesis is yet to be revealed. Functional annotation of the genes has given a better understanding of the genomic features and genes involved in piperine biosynthesis. Phylogenetic relationship of long pepper with other members of Piperaceae family and the expression of <i>Piperine synthase</i> and <i>Piperamide synthase</i> genes in the developing leaves and spikes were also analyzed. The results indicated that this medicinal plant may have genes similar to black pepper involved in the biosynthesis of piperine. Raw reads and the assembly are made publicly available.</p>\",\"PeriodicalId\":10849,\"journal\":{\"name\":\"Crop Science\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2024-07-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Crop Science\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/csc2.21313\",\"RegionNum\":3,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"AGRONOMY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Crop Science","FirstCategoryId":"97","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/csc2.21313","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"AGRONOMY","Score":null,"Total":0}
引用次数: 0

摘要

报告了一种重要的药用植物胡椒(胡椒科,Piper longum)的基因组。测序是在 Illumina Novaseq-6000 平台上以 150 倍覆盖率进行的,支架级的从头组装产生了 447.7 Mb 的基因组(89 204 个支架,N50 值为 10.7 kb)。尽管长辣椒因其辛辣生物碱(尤其是胡椒碱)而备受青睐,但胡椒碱的生物合成机制仍有待揭示。对基因的功能注释使人们对参与胡椒碱生物合成的基因组特征和基因有了更好的了解。此外,还分析了长辣椒与胡椒科其他成员的系统发育关系,以及胡椒碱合成酶和胡椒酰胺合成酶基因在发育叶片和穗状花序中的表达情况。结果表明,这种药用植物可能具有与黑胡椒类似的参与胡椒碱生物合成的基因。原始读数和组装结果可公开获取。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
The draft genome of Piper longum L.

Genome of Piper longum (long pepper, Piperaceae), an important medicinal plant, is being reported. The sequencing was carried out on Illumina Novaseq-6000 platform at 150x coverage, and de novo scaffold-level assembly has resulted in a 447.7 Mb genome (89,204 scaffolds with an N50 value of 10.7 kb). Even though long pepper is valued for its pungent alkaloids, especially piperine, mechanism of piperine biosynthesis is yet to be revealed. Functional annotation of the genes has given a better understanding of the genomic features and genes involved in piperine biosynthesis. Phylogenetic relationship of long pepper with other members of Piperaceae family and the expression of Piperine synthase and Piperamide synthase genes in the developing leaves and spikes were also analyzed. The results indicated that this medicinal plant may have genes similar to black pepper involved in the biosynthesis of piperine. Raw reads and the assembly are made publicly available.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Crop Science
Crop Science 农林科学-农艺学
CiteScore
4.50
自引率
8.70%
发文量
197
审稿时长
3 months
期刊介绍: Articles in Crop Science are of interest to researchers, policy makers, educators, and practitioners. The scope of articles in Crop Science includes crop breeding and genetics; crop physiology and metabolism; crop ecology, production, and management; seed physiology, production, and technology; turfgrass science; forage and grazing land ecology and management; genomics, molecular genetics, and biotechnology; germplasm collections and their use; and biomedical, health beneficial, and nutritionally enhanced plants. Crop Science publishes thematic collections of articles across its scope and includes topical Review and Interpretation, and Perspectives articles.
期刊最新文献
A finite mixture distribution to model genetic architecture of image‐based oat grain morphology Plant‐based protein crops and their improvement: Current status and future perspectives Shade, height of cut, and plant growth regulator effects on bermudagrass and zoysiagrass putting greens Impact of flooding at the early reproductive growth stage on soybean yield and seed composition Characterization of a gene conferring resistance to US Russian wheat aphid biotypes in the Iranian wheat landrace PI 625139
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1