{"title":"基于带注意机制的改进型 YOLOv8 算法检测高通量液体处理工作站中移液器吸头上的液体滞留情况","authors":"Yanpu Yin, Jiahui Lei, Wei Tao","doi":"10.3390/electronics13142836","DOIUrl":null,"url":null,"abstract":"High-throughput liquid handling workstations are required to process large numbers of test samples in the fields of life sciences and medicine. Liquid retention and droplets hanging in the pipette tips can lead to cross-contamination of samples and reagents and inaccurate experimental results. Traditional methods for detecting liquid retention have low precision and poor real-time performance. This paper proposes an improved YOLOv8 (You Only Look Once version 8) object detection algorithm to address the challenges posed by different liquid sizes and colors, complex situation of test tube racks and multiple samples in the background, and poor global image structure understanding in pipette tip liquid retention detection. A global context (GC) attention mechanism module is introduced into the backbone network and the cross-stage partial feature fusion (C2f) module to better focus on target features. To enhance the ability to effectively combine and process different types of data inputs and background information, a Large Kernel Selection (LKS) module is also introduced into the backbone network. Additionally, the neck network is redesigned to incorporate the Simple Attention (SimAM) mechanism module, generating attention weights and improving overall performance. We evaluated the algorithm using a self-built dataset of pipette tips. Compared to the original YOLOv8 model, the improved algorithm increased mAP@0.5 (mean average precision), F1 score, and precision by 1.7%, 2%, and 1.7%, respectively. The improved YOLOv8 algorithm can enhance the detection capability of liquid-retaining pipette tips, and prevent cross-contamination from affecting the results of sample solution experiments. It provides a detection basis for subsequent automatic processing of solution for liquid retention.","PeriodicalId":504598,"journal":{"name":"Electronics","volume":" 92","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Detection of Liquid Retention on Pipette Tips in High-Throughput Liquid Handling Workstations Based on Improved YOLOv8 Algorithm with Attention Mechanism\",\"authors\":\"Yanpu Yin, Jiahui Lei, Wei Tao\",\"doi\":\"10.3390/electronics13142836\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"High-throughput liquid handling workstations are required to process large numbers of test samples in the fields of life sciences and medicine. Liquid retention and droplets hanging in the pipette tips can lead to cross-contamination of samples and reagents and inaccurate experimental results. Traditional methods for detecting liquid retention have low precision and poor real-time performance. This paper proposes an improved YOLOv8 (You Only Look Once version 8) object detection algorithm to address the challenges posed by different liquid sizes and colors, complex situation of test tube racks and multiple samples in the background, and poor global image structure understanding in pipette tip liquid retention detection. A global context (GC) attention mechanism module is introduced into the backbone network and the cross-stage partial feature fusion (C2f) module to better focus on target features. To enhance the ability to effectively combine and process different types of data inputs and background information, a Large Kernel Selection (LKS) module is also introduced into the backbone network. Additionally, the neck network is redesigned to incorporate the Simple Attention (SimAM) mechanism module, generating attention weights and improving overall performance. We evaluated the algorithm using a self-built dataset of pipette tips. Compared to the original YOLOv8 model, the improved algorithm increased mAP@0.5 (mean average precision), F1 score, and precision by 1.7%, 2%, and 1.7%, respectively. The improved YOLOv8 algorithm can enhance the detection capability of liquid-retaining pipette tips, and prevent cross-contamination from affecting the results of sample solution experiments. It provides a detection basis for subsequent automatic processing of solution for liquid retention.\",\"PeriodicalId\":504598,\"journal\":{\"name\":\"Electronics\",\"volume\":\" 92\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-07-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Electronics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.3390/electronics13142836\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Electronics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.3390/electronics13142836","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
生命科学和医学领域需要高通量液体处理工作站来处理大量测试样品。移液器吸头中的液体滞留和液滴悬挂会导致样品和试剂的交叉污染以及不准确的实验结果。传统的液体滞留检测方法精度低、实时性差。本文提出了一种改进的 YOLOv8(You Only Look Once version 8)对象检测算法,以解决移液管吸头液体滞留检测中不同液体大小和颜色、试管架和背景中多个样品的复杂情况以及全局图像结构理解能力差所带来的挑战。在骨干网络和跨阶段部分特征融合(C2f)模块中引入了全局上下文(GC)关注机制模块,以更好地关注目标特征。为了提高有效组合和处理不同类型数据输入和背景信息的能力,主干网络还引入了大核选择(LKS)模块。此外,我们还重新设计了颈部网络,将简单注意力(SimAM)机制模块纳入其中,以生成注意力权重并提高整体性能。我们使用自建的移液器吸头数据集对算法进行了评估。与最初的 YOLOv8 模型相比,改进后的算法在 mAP@0.5(平均精度)、F1 分数和精度方面分别提高了 1.7%、2% 和 1.7%。改进后的 YOLOv8 算法可以提高留液吸头的检测能力,防止交叉污染影响样品溶液实验结果。它为后续自动处理留液溶液提供了检测依据。
Detection of Liquid Retention on Pipette Tips in High-Throughput Liquid Handling Workstations Based on Improved YOLOv8 Algorithm with Attention Mechanism
High-throughput liquid handling workstations are required to process large numbers of test samples in the fields of life sciences and medicine. Liquid retention and droplets hanging in the pipette tips can lead to cross-contamination of samples and reagents and inaccurate experimental results. Traditional methods for detecting liquid retention have low precision and poor real-time performance. This paper proposes an improved YOLOv8 (You Only Look Once version 8) object detection algorithm to address the challenges posed by different liquid sizes and colors, complex situation of test tube racks and multiple samples in the background, and poor global image structure understanding in pipette tip liquid retention detection. A global context (GC) attention mechanism module is introduced into the backbone network and the cross-stage partial feature fusion (C2f) module to better focus on target features. To enhance the ability to effectively combine and process different types of data inputs and background information, a Large Kernel Selection (LKS) module is also introduced into the backbone network. Additionally, the neck network is redesigned to incorporate the Simple Attention (SimAM) mechanism module, generating attention weights and improving overall performance. We evaluated the algorithm using a self-built dataset of pipette tips. Compared to the original YOLOv8 model, the improved algorithm increased mAP@0.5 (mean average precision), F1 score, and precision by 1.7%, 2%, and 1.7%, respectively. The improved YOLOv8 algorithm can enhance the detection capability of liquid-retaining pipette tips, and prevent cross-contamination from affecting the results of sample solution experiments. It provides a detection basis for subsequent automatic processing of solution for liquid retention.