T. Le, H. La, Ha Duc Chu, Quyen Thi Ha, Le Thi Ngoc Quynh, Tran Thi Thanh Huyen, Tran Van Tien, Dong Huy Gioi, Minh Hong Pham, Vinh Thanh Tran, Thi Bich Ngoc Chu, Phi Bang Cao
{"title":"藜麦(Chenopodium quinoa)中 GATA 转录因子家族的全基因组分析:鉴定、表征和表达谱","authors":"T. Le, H. La, Ha Duc Chu, Quyen Thi Ha, Le Thi Ngoc Quynh, Tran Thi Thanh Huyen, Tran Van Tien, Dong Huy Gioi, Minh Hong Pham, Vinh Thanh Tran, Thi Bich Ngoc Chu, Phi Bang Cao","doi":"10.11594/jtls.14.02.02","DOIUrl":null,"url":null,"abstract":"GATA-binding factor (GATA) proteins are the transcription factor (TF) family that are commonly involved in plant growth and development. The GATA TF family has been successfully identified and characterized for various higher plant species, but there is little research on the GATA TF family in quinoa (Chenopodium quinoa). In this present study, a total of 32 CqGATA genes were identified and analyzed in the quinoa genome. While the general features of the CqGATA TFs in quinoa were slightly variable, the majority of genes encoding the CqGATA TFs contained two and three exons. Our phylogenetic analysis demonstrated that the CqGATA TFs could be classified into four different groups. Gene expression analysis indicated that the expression profiles of the CqGATA genes varied in different tissues. Overall, our study could provide a reference for further functional characterization of the CqGATA genes in quinoa.","PeriodicalId":17638,"journal":{"name":"Journal of Tropical Life Science","volume":" 7","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles\",\"authors\":\"T. Le, H. La, Ha Duc Chu, Quyen Thi Ha, Le Thi Ngoc Quynh, Tran Thi Thanh Huyen, Tran Van Tien, Dong Huy Gioi, Minh Hong Pham, Vinh Thanh Tran, Thi Bich Ngoc Chu, Phi Bang Cao\",\"doi\":\"10.11594/jtls.14.02.02\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"GATA-binding factor (GATA) proteins are the transcription factor (TF) family that are commonly involved in plant growth and development. The GATA TF family has been successfully identified and characterized for various higher plant species, but there is little research on the GATA TF family in quinoa (Chenopodium quinoa). In this present study, a total of 32 CqGATA genes were identified and analyzed in the quinoa genome. While the general features of the CqGATA TFs in quinoa were slightly variable, the majority of genes encoding the CqGATA TFs contained two and three exons. Our phylogenetic analysis demonstrated that the CqGATA TFs could be classified into four different groups. Gene expression analysis indicated that the expression profiles of the CqGATA genes varied in different tissues. Overall, our study could provide a reference for further functional characterization of the CqGATA genes in quinoa.\",\"PeriodicalId\":17638,\"journal\":{\"name\":\"Journal of Tropical Life Science\",\"volume\":\" 7\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-07-17\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Tropical Life Science\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.11594/jtls.14.02.02\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"Agricultural and Biological Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Tropical Life Science","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.11594/jtls.14.02.02","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles
GATA-binding factor (GATA) proteins are the transcription factor (TF) family that are commonly involved in plant growth and development. The GATA TF family has been successfully identified and characterized for various higher plant species, but there is little research on the GATA TF family in quinoa (Chenopodium quinoa). In this present study, a total of 32 CqGATA genes were identified and analyzed in the quinoa genome. While the general features of the CqGATA TFs in quinoa were slightly variable, the majority of genes encoding the CqGATA TFs contained two and three exons. Our phylogenetic analysis demonstrated that the CqGATA TFs could be classified into four different groups. Gene expression analysis indicated that the expression profiles of the CqGATA genes varied in different tissues. Overall, our study could provide a reference for further functional characterization of the CqGATA genes in quinoa.