基于深度学习算法的胃腺癌组织病理学分类鉴定和预后指标建立。

IF 1.2 4区 医学 Q3 PATHOLOGY Medical Molecular Morphology Pub Date : 2024-08-01 DOI:10.1007/s00795-024-00399-8
Zhihui Wang, Hui Peng, Jie Wan, Anping Song
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引用次数: 0

摘要

本研究的目的是建立一个深度学习(DL)模型,基于全滑动图像(WSI)预测胃腺癌的病理类型。我们从癌症基因组图谱数据库中下载了356张胃腺癌(STAD)患者的组织病理学图像,并将其随机分为训练集、验证集和测试集(8:1:1)。此外,还收集了 80 例经 H&E 染色的 STAD WSIs 作为外部验证。CLAM 工具用于切割 WSIs,并通过 DL 算法进一步构建模型,在识别和预测组织病理学亚型方面达到了 90% 以上的准确率。外部验证结果表明该模型具有一定的泛化能力。此外,还从模型中提取了DL特征,以进一步研究两种亚型在免疫浸润和患者预后方面的差异。DL模型能准确预测STAD患者的病理分型,为临床诊断提供一定的参考价值。DL特征、基因特征和临床特征相结合的提名图可作为预后分类器,用于临床决策和治疗。
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Identification of histopathological classification and establishment of prognostic indicators of gastric adenocarcinoma based on deep learning algorithm.

The aim of this study is to establish a deep learning (DL) model to predict the pathological type of gastric adenocarcinoma cancer based on whole-slide images(WSIs). We downloaded 356 histopathological images of gastric adenocarcinoma (STAD) patients from The Cancer Genome Atlas database and randomly divided them into the training set, validation set and test set (8:1:1). Additionally, 80 H&E-stained WSIs of STAD were collected for external validation. The CLAM tool was used to cut the WSIs and further construct the model by DL algorithm, achieving an accuracy of over 90% in identifying and predicting histopathological subtypes. External validation results demonstrated the model had a certain generalization ability. Moreover, DL features were extracted from the model to further investigate the differences in immune infiltration and patient prognosis between the two subtypes. The DL model can accurately predict the pathological classification of STAD patients, and provide certain reference value for clinical diagnosis. The nomogram combining DL-signature, gene-signature and clinical features can be used as a prognostic classifier for clinical decision-making and treatment.

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来源期刊
Medical Molecular Morphology
Medical Molecular Morphology 医学-病理学
CiteScore
2.90
自引率
5.60%
发文量
30
审稿时长
>12 weeks
期刊介绍: Medical Molecular Morphology is an international forum for researchers in both basic and clinical medicine to present and discuss new research on the structural mechanisms and the processes of health and disease at the molecular level. The structures of molecules, organelles, cells, tissues, and organs determine their normal function. Disease is thus best understood in terms of structural changes in these different levels of biological organization, especially in molecules and molecular interactions as well as the cellular localization of chemical components. Medical Molecular Morphology welcomes articles on basic or clinical research in the fields of cell biology, molecular biology, and medical, veterinary, and dental sciences using techniques for structural research such as electron microscopy, confocal laser scanning microscopy, enzyme histochemistry, immunohistochemistry, radioautography, X-ray microanalysis, and in situ hybridization. Manuscripts submitted for publication must contain a statement to the effect that all human studies have been reviewed by the appropriate ethics committee and have therefore been performed in accordance with the ethical standards laid down in an appropriate version of the 1964 Declaration of Helsinki. It should also be stated clearly in the text that all persons gave their informed consent prior to their inclusion in the study. Details that might disclose the identity of the subjects under study should be omitted.
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