通过动态熵形式对延时相互作用进行逆建模

IF 2.4 3区 物理与天体物理 Q1 Mathematics Physical review. E Pub Date : 2024-08-01 DOI:10.1103/physreve.110.024301
Elena Agliari, Francesco Alemanno, Adriano Barra, Michele Castellana, Daniele Lotito, Matthieu Piel
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引用次数: 0

摘要

尽管瞬时相互作用不符合物理学原理,但各种最大熵统计推断方法都能使模型推断的等时相关函数与经验测量的等时相关函数相匹配。以活动单元的集体运动为重点,当相互作用的时间尺度远快于相互作用单元的时间尺度时,这种约束是合理的,如在椋鸟群中;但在许多反例中,如在白细胞协调中(信号蛋白在两个细胞间扩散),这种约束就失效了。在这里,我们放宽了这一假设,并开发了一种最大熵框架的路径积分方法,其中包括信号延迟。我们的方法不仅能推断耦合和场的强度,还能推断耦合在单元间完全传递信息所需的时间。我们在海森堡-库拉莫托(Heisenberg-Kuramoto)模型和维克塞克(Vicsek)模型生成的非马尔可夫轨迹合成数据集上证明了我们方法的有效性,这些数据集配备了延迟互动。作为概念验证,我们还将这种方法应用于树突迁移实验,在这种实验中,匹配等时相关性会导致显著的信息损失。
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Inverse modeling of time-delayed interactions via the dynamic-entropy formalism
Although instantaneous interactions are unphysical, a large variety of maximum entropy statistical inference methods match the model-inferred and the empirically measured equal-time correlation functions. Focusing on collective motion of active units, this constraint is reasonable when the interaction timescale is much faster than that of the interacting units, as in starling flocks, yet it fails in a number of counterexamples, as in leukocyte coordination (where signaling proteins diffuse among two cells). Here, we relax this assumption and develop a path integral approach to maximum-entropy framework, which includes delay in signaling. Our method is able to infer the strength of couplings and fields, but also the time required by the couplings to completely transfer information among the units. We demonstrate the validity of our approach providing excellent results on synthetic datasets of non-Markovian trajectories generated by the Heisenberg-Kuramoto and Vicsek models equipped with delayed interactions. As a proof of concept, we also apply the method to experiments on dendritic migration, where matching equal-time correlations results in a significant information loss.
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来源期刊
Physical review. E
Physical review. E 物理-物理:流体与等离子体
CiteScore
4.60
自引率
16.70%
发文量
0
审稿时长
3.3 months
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
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