分子机制揭示了马尾蝠成虫(鞘翅目:角蝇科)雌雄成虫的不同表达基因

IF 1.1 3区 农林科学 Q3 ENTOMOLOGY Journal of Asia-pacific Entomology Pub Date : 2024-07-29 DOI:10.1016/j.aspen.2024.102296
Xinju Wei , Danping Xu , Habib Ali , Peng Qin , Zhihang Zhuo
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引用次数: 0

摘要

(Hope)(鞘翅目:Cerambycidae)是中国重要的蛀木害虫,主要危害用材林和经济林。然而,其基因组资源仍然有限,制约了发现害虫控制的分子和遗传机制的能力。本研究利用RNA-seq对PacBio Iso-Seq数据进行校正,深入分析了雌雄成虫的差异基因,以更全面地了解该害虫的分子特征。测序结果产生了 41.16 GB 的原始数据和 38.26 GB 的纯净数据,得到了 42 005 个全长转录本。平均转录本长度为 2,609 bp,N50 长度为 2,858 bp,N90 长度为 1,714 bp。表达分析发现了 208 个差异表达基因(DEG)。利用基因本体(GO)和京都基因和基因组百科全书(KEGG)对这些 DEGs 进行的富集分析表明,它们参与了能量代谢、生物合成和细胞信号传导途径。这些途径共同维持着生物体内的代谢平衡、信号转导网络和对外部环境的适应性。定量实时 PCR(qRT-PCR)用于进一步验证基因表达水平,结果与 RNA-seq 一致。本研究获得的转录组数据为揭示害虫的分子机制提供了更多有价值的信息,并为害虫控制工作提供了潜在的参考点。
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Molecular mechanisms uncovers differentially expressed genes in male and female adults of Batocera horsfieldi (Coleoptera: Cerambycidae)

Batocera horsfieldi (Hope) (Coleoptera: Cerambycidae) is a significant wood-boring pest in China, primarily affecting timber forests and economic plantations. However, the genomic resources of B. horsfieldi remain limited, constraining the ability to discover molecular and genetic mechanisms for pest control. This study used RNA-seq to correct PacBio Iso-Seq data, thoroughly analyzing the differential genes of male and female adult B. horsfieldi to gain a more comprehensive understanding of the molecular characteristics of this pest. The sequencing results generated 41.16 GB of raw data and 38.26 GB of clean data, yielding 42,005 full-length transcripts. The average transcript length was 2,609 bp, with an N50 length of 2,858 bp and an N90 length of 1,714 bp. Expression analysis revealed 208 differentially expressed genes (DEGs). Enrichment analysis of these DEGs using Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) indicated their involvement in energy metabolism, biosynthesis, and cell signal transduction pathways. These pathways collectively maintain metabolic balance, signal transduction networks, and adaptability to external environments within the organism. Quantitative real-time PCR (qRT-PCR) was used for further validation of gene expression levels, and the results were consistent with RNA-seq. The transcriptome data obtained in this study provide additional valuable information for unraveling the molecular mechanisms of B. horsfieldi and offer potential reference points for pest control efforts.

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来源期刊
Journal of Asia-pacific Entomology
Journal of Asia-pacific Entomology Agricultural and Biological Sciences-Insect Science
CiteScore
2.70
自引率
6.70%
发文量
152
审稿时长
69 days
期刊介绍: The journal publishes original research papers, review articles and short communications in the basic and applied area concerning insects, mites or other arthropods and nematodes of economic importance in agriculture, forestry, industry, human and animal health, and natural resource and environment management, and is the official journal of the Korean Society of Applied Entomology and the Taiwan Entomological Society.
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