NCI SEER 链接虚拟组织库试点。

Pamela Sanchez, Alison L Van Dyke, Valentina I Petkov, Yao Yuan, Sarah Bonds, Connor Valenzuela, Alyssa W Tuan, Radim Moravec, Sean F Altekruse, Aatur D Singhi, Kate M Serdy, Yun Wu, Rosemary D Cress, Jennifer A Doherty, Lloyd Mueller, Brenda Y Hernandez, Charles F Lynch, Thomas C Tucker, Xiao-Cheng Wu, Lynn Matrisian, Lynne Penberthy
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引用次数: 0

摘要

背景:美国国家癌症研究所(National Cancer Institute)的监测、流行病学和最终结果(SEER)计划测试了基于人群的癌症登记处是否可以作为诚实的中间人,在 SEER 链接虚拟组织库(VTR)试点中获取组织和数据:我们收集了胰腺导管腺癌(PDAC)和乳腺癌(BC)患者的福尔马林固定、石蜡包埋组织和临床数据,用于两项研究,将生存期极不寻常(PDAC≥5年,BC≤30个月)的癌症病例与生存期正常(PDAC≤2年,BC≥5年)的配对对照进行比较。成功的定义是登记处能够获得具有高度异常结果的癌症病例的组织和数据:在符合组织采集条件的98例PDAC和103例BC配对病例中,组织采集的损耗来源包括组织无法获得、与失败病例配对的对照、未申请的第二个对照、肿瘤坏死≥20%以及肿瘤细胞度较低。总共有 70 例(71%)PDAC 和 74 例(72%)BC 配对病例获得了符合研究标准的组织。对于获得组织的患者,临床数据的完整性从治疗后CA-19-9的59%到边缘状态、是否接受放疗和化疗以及合并症的>95%不等:VTR试点项目证明了利用SEER癌症登记处作为诚信中介提供组织和临床数据供研究二次使用的可行性。使用该计划进行的研究应超量抽样 45%-50%,以获得足够的样本量和目标人群代表性,并让亚专科病理专家参与组织选择。
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NCI SEER-Linked Virtual Tissue Repository Pilot.

Background: The Surveillance, Epidemiology, and End Results (SEER) Program with the National Cancer Institute tested whether population-based cancer registries can serve as honest brokers to acquire tissue and data in the SEER-Linked Virtual Tissue Repository (VTR) Pilot.

Methods: We collected formalin-fixed, paraffin-embedded tissue and clinical data from patients with pancreatic ductal adenocarcinoma (PDAC) and breast cancer (BC) for two studies comparing cancer cases with highly unusual survival (≥5 years for PDAC and ≤30 months for BC) to pair-matched controls with usual survival (≤2 years for PDAC and ≥5 years for BC). Success was defined as the ability for registries to acquire tissue and data on cancer cases with highly unusual outcomes.

Results: Of 98 PDAC and 103 BC matched cases eligible for tissue collection, sources of attrition for tissue collection were tissue being unavailable, control paired with failed case, second control that was not requested, tumor necrosis ≥20%, and low tumor cellularity. In total, tissue meeting the study criteria was obtained for 70 (71%) PDAC and 74 (72%) BC matched cases. For patients with tissue received, clinical data completeness ranged from 59% for CA-19-9 after treatment to >95% for margin status, whether radiation therapy and chemotherapy were administered, and comorbidities.

Conclusions: The VTR Pilot demonstrated the feasibility of using SEER cancer registries as honest brokers to provide tissue and clinical data for secondary use in research. Studies using this program should oversample by 45% to 50% to obtain sufficient sample size and targeted population representation and involve subspecialty matter expert pathologists for tissue selection.

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